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Unknown (2883)
Proteomics (396)
Transcriptomics (120)
Genomics (67)
Metabolomics (7)
Models (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (388)
Allexis (388)
Arabidopsis thaliana (388)
Cyanophora paradoxa (388)
Ensifer adhaerens (388)
Entamoeba histolytica (388)
Escherichia coli (388)
Globicatella sanguinis (388)
Histomonas meleagridis (388)
Leishmania major strain Friedlin (388)
Listeria monocytogenes (388)
Lotus japonicus (388)
Medicago truncatula (388)
Methylohalobius crimeensis 10Ki (388)
Mus musculus (388)
Mycobacterium tuberculosis (388)
Oryza sativa Indica Group (388)
Mus musculus (67)
Homo sapiens (62)
Arabidopsis thaliana (5)
Heterocephalus glaber (2)
Rattus norvegicus (2)
Brachypodium distachyon (2)
Aedes aegypti (1)
Solanum lycopersicum (1)
Escherichia coli K-12 (1)
Escherichia coli (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
Homo (1)

Organisms

Homo sapiens (6)
Brachypodium distachyon (2)
Arabidopsis thaliana (2)
Sphingobium yanoikuyae (1)
Caenorhabditis elegans (1)
hot springs metagenome (1)
freshwater metagenome (1)
Mus musculus (1)

Repository

pride (388)
biostudies-arrayexpress (133)
ENA (46)
MassIVE (8)
MetaboLights (6)
geo (5)
EGA (3)
BioModels (1)
GNPS (1)

Tissue

Cell culture (50)
Blood plasma (39)
Brain (30)
Epithelial cell (21)
Liver (21)
Blood serum (19)
Blood (18)
Blood cell (12)
Cerebrospinal fluid (12)
Lung (11)
Hepatocyte (10)
T cell (10)
B cell (8)
Bone marrow (8)
Heart (7)
Kidney (7)
Blood platelet (6)
Extracellular vesicle (6)
Leukocyte (6)
Skin (6)
Stem cell (6)
Colon (5)
Early embryonic cell (5)
Melanocyte (5)
Pancreas (5)
Permanent cell line cell (5)
Tear (5)
Embryonic fibroblast (4)
Lymph node (4)
Macrophage (4)

Disease

Breast cancer (9)
Acute leukemia (8)
COVID-19 (8)
Lymphoma (6)
Pancreatic cancer (5)
Cervix carcinoma (4)
Intracerebral hemorrhage (4)
Melanoma (4)
Pancreatic ductal adenocarcinoma (4)
Amyotrophic lateral sclerosis (3)
Brain cancer (3)
Disease free (3)
Leukoencephalopathy with vanishing white matter (3)
Liver cancer (3)
Multiple myeloma (3)
Multiple sclerosis (3)
Neck carcinoma (3)
Non-small cell lung carcinoma (3)
Osteoarthritis (3)
Parkinson's disease (3)
Alzheimer's disease (2)
Brain glioblastoma multiforme (2)
Cardiovascular system disease (2)
Chronic kidney disease (2)
Chronic myeloid leukemia (2)
Colon cancer (2)
Hepatocellular carcinoma (2)
Influenza (2)
Periodontitis (2)
Wounds and Injuries (2)

Technology Type

Mass Spectrometry (388)
Shotgun proteomics (183)
Bottom-up proteomics (97)
Data-independent acquisition (59)
SWATH MS (51)
Data-dependent acquisition (48)
Affinity purification coupled with mass spectrometry proteomics (23)
Chemical cross-linking coupled with mass spectrometry proteomics (18)
Top-down proteomics (8)
Mass spectrometry (5)
All-ion fragmentation (5)
DiaPASEF (5)
Gel-based experiment (5)
SRM/MRM (4)
Affinity proteomics (2)
Mass spectrometry assay (1)
HDMSE (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (14)
Illumina HiSeq 2000 (11)
Illumina HiSeq 4000 (5)
NextSeq 500 (5)
Illumina HiSeq 2500 (4)
Agilent 1290 UHPLC + QQQ 6470 (3)
Agilent 7890A GC + QQQ 7000C (3)
Dionex U3000 + Orbitrap Q-Exactive (3)
BD Influx sorter (2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
Qubit (2)
Illumina MiSeq (2)
Bravo automated liquid handling robot station (Agilent) (1)
-- (1)
Covaris (1)
Cell Sorter Aria III or Influx (BD biosciences) (1)
Covaris S220 (LGC Genomics GmbH), Bioanalyseur 2100 (Agilent), Bravo Platform (Agilent) (1)
BD Influx (1)
Agilent 2100 Bioanalyzer (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Orbitrap Fusion, Q Exactive (1)
Agilent 1290 Infinity II Series HPLC (1)
Agilent 6550 Q-TOF Mass Spectrometer (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2025 (93)
2024 (72)
2026 (61)
2023 (54)
2021 (51)
2022 (45)
2020 (25)
2018 (21)
2015 (19)
2010 (16)
2016 (15)
2014 (15)
2019 (14)
2013 (13)
2011 (9)
2012 (8)
2008 (5)
2017 (3)
2009 (2)

CHEBI ID

CHEBI:16335 (4)
CHEBI:16919 (4)
CHEBI:27732 (4)
CHEBI:15354 (4)
CHEBI:1547 (3)
CHEBI:16709 (3)
CHEBI:16344 (3)
CHEBI:16708 (3)
CHEBI:16750 (3)
CHEBI:15741 (3)
CHEBI:18243 (3)
CHEBI:28790 (3)
CHEBI:17568 (3)
CHEBI:7916 (3)
CHEBI:17750 (3)
CHEBI:16467 (3)
CHEBI:46195 (3)
CHEBI:16737 (3)
CHEBI:35280 (3)
CHEBI:17895 (3)
CHEBI:17295 (3)
CHEBI:16828 (3)
CHEBI:18089 (3)
CHEBI:17687 (3)
CHEBI:25351 (2)
CHEBI:49002 (2)
CHEBI:70801 (2)
CHEBI:131454 (2)
CHEBI:145235 (2)
CHEBI:145234 (2)

Metabolite Name

Creatine (4)
PIPES (3)
Acetaminophen (3)
Uracil (3)
Pantothenic acid (3)
Choline (3)
Glycocholic acid (3)
Adenosine (3)
L-Tryptophan (3)
Adenine (3)
Uric acid (3)
Creatinine (3)
Caffeine (3)
Hippuric acid (3)
L-Phenylalanine (3)
N-Acetylarginine (2)
Glycocyamine (2)
CHES (2)
4-Hydroxy-3-methylbenzoic acid (2)
1,3,7-Trimethyluric acid (2)
Chenodeoxycholic acid (2)
HEPES (2)
Betaine (2)
Propranolol (2)
Paraxanthine (2)
Diethanolamine (2)
Cysteine-S-sulfate (2)
L-Proline (2)
4-Pyridoxic acid (2)
Kynurenic acid (2)

IsPrivate

False (1)

First Public Date

2025 (10)
2026 (8)
2024 (6)
2023 (5)
2020 (5)
2021 (4)
2017 (4)
2018 (2)
2019 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (72)
RNA-seq of coding RNA (17)
ChIP-seq (15)
RNA-seq of coding RNA from single cells (7)
Methylation profiling by array (5)
Cell line - High-throughput sequencing (3)
High-throughput sequencing (2)
DNA-seq (2)
Cell line - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
MBD-seq (1)
Comparative genomic hybridization by array (1)
Exome sequencing (1)
Other (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (388)
2025 (352)
2023 (352)
2024 (321)
2021 (321)
2020 (261)
2019 (188)
2018 (153)
2017 (124)
2016 (102)
2015 (92)
2014 (86)
2026 (62)
2013 (49)
2012 (44)
2010 (37)
2011 (36)
2008 (17)
2009 (14)
2006 (6)
2007 (4)
2005 (3)
2000 (2)
2003 (1)
1998 (1)

Lab affiliation

Instituto de Investigaciones Sanitarias de Santiago de Compostela (29)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (5)
Department of Molecular Cell Biology, Weizmann institute of Science, Israel (5)
King's College London (5)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (4)
German Cancer Research Center (DKFZ) Cell Signaling and Metabolism Division Head (4)
Department of Physiology and Biophysics, University of Illinois at Chicago (3)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (3)
Goethe-Universität Frankfurt, Georg-Speyer-Haus, Paul-Ehrlich-Str. 42-44, Frankfurt am Main, GERMANY (3)
Proteomics Core Facility, Biozentrum, University of Basel, Switzerland (3)
Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 D-82152 Martinsried (3)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (2)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
CRUK -CRUK Scotland nstitute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Core Unit Proteomics, Berlin Institute of Health at Charite - Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (2)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (2)
Div. Clinical Protein Science & Imaging, Dept. of Clinical Sciences (Lund) and Dept. of Biomedical Engineering, Lund University, Lund, Sweden (2)
Division Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, Germany (2)
ErasmusMC Neurology Laboratory of clinical and cancer proteomics Rotterdam The Netherlands (2)
Instituto de Investigaciones sanitarias de Santiago de Compostela (2)
King’s British Heart Foundation Centre of Research Excellence, King's College London, United Kingdom (2)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (2)
Lund University, Faculty of Medicine, Department of Clinical Sciences Lund, Division of Infection Medicine, Lund, Sweden (2)
Molecular Neuropharmacology and Genetics Laboratory, Department of Neuroscience, Faculty of Health and Medical Sciences, University of Copenhagen, 2200, Denmark (2)
Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (2)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (2)
Utrecht University (2)
- Department of Clinical Biochemistry, Copenhagen University Hospital - Bispebjerg and Frederiksberg Hospital, Copenhagen, Denmark - NNF Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen (1)

3474 Results

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