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Transcriptomics
(799)
Unknown
(565)
Genomics
(135)
Proteomics
(16)
Other
(11)
Methylation profiling
(3)
Metabolomics
(1)
Organisms
Homo sapiens
(388)
Mus musculus
(231)
Rattus norvegicus
(24)
Streptococcus pneumoniae D39
(16)
Saccharomyces cerevisiae
(15)
Arabidopsis thaliana
(15)
Drosophila melanogaster
(14)
Bos taurus
(9)
Danio rerio
(9)
Sus scrofa
(8)
Oryza sativa Japonica Group
(4)
Canis lupus familiaris
(4)
Macaca mulatta
(3)
Schizosaccharomyces pombe
(3)
Oryza sativa
(3)
Oncorhynchus mykiss
(3)
Escherichia coli
(3)
Gallus gallus
(3)
Xylella fastidiosa
(2)
Zea mays
(2)
Anopheles gambiae
(2)
Salmo salar
(2)
Glycine max
(2)
Ovis aries
(2)
Nasonia giraulti
(1)
Agrobacterium tumefaciens
(1)
activated sludge metagenome
(1)
Streptococcus dysgalactiae subsp. equisimilis
(1)
Saccharum sp.
(1)
Amycolatopsis mediterranei S699
(1)
Organisms
Homo sapiens
(56)
Mus musculus
(24)
Rattus norvegicus
(1)
Repository
biostudies-arrayexpress
(772)
ENA
(102)
geo
(65)
EGA
(7)
MassIVE
(7)
pride
(6)
iProX
(3)
EVA
(1)
jPOST
(1)
MetaboLights
(1)
Tissue
Epithelial cell
(2)
Mammary gland
(2)
Cell culture
(1)
Cell suspension culture
(1)
Diploid cell
(1)
Permanent cell line cell
(1)
Disease
Breast cancer
(5)
HPV positive
(1)
High grade glioblastoma
(1)
Primary effusion lymphoma (PEL)
(1)
Schizophrenia
(1)
HIV-Tuberculosis with Immune Reconstitution Inflammatory Syndrome
(1)
Leukemia
(1)
Renal cell carcinoma
(1)
Disease free
(1)
Technology Type
Mass Spectrometry
(6)
Bottom-up proteomics
(3)
SWATH MS
(2)
ILLUMINA, Illumina HiSeq 2500
(1)
Mass spectrometry assay
(1)
Affinity purification coupled with mass spectrometry proteomics
(1)
Instrument Platform
NextSeq 500
(3)
Illumina NovaSeq 6000
(3)
Q Exactive
(2)
Illumina Genome Analyzer IIx
(1)
Illumina NovaSeq X
(1)
NA
(1)
Illumina MiSeq
(1)
Illumina HiSeq 2500
(1)
6560 Q-TOF LC/MS
(1)
LTQ
(1)
NanoACQUITY UPLC
(1)
Q Exactive HF (Thermo Scientific Instrument Model)
(1)
Synapt G2 HDMS
(1)
TripleTOF 5600
(1)
Liquid Chromatography MS - negative - hilic
(1)
Liquid Chromatography MS - positive - hilic
(1)
Publication Date
2015
(134)
2013
(119)
2010
(119)
2014
(104)
2011
(86)
2012
(85)
2008
(41)
2016
(35)
2009
(25)
2021
(19)
2007
(17)
2025
(16)
2022
(13)
2026
(12)
2024
(9)
2020
(5)
2023
(4)
2018
(4)
2017
(3)
2005
(3)
2006
(1)
2004
(1)
2019
(1)
Metabolite Name
2'-Deoxyadenosine 5'-triphosphate (dATP)
(1)
2'-Deoxycytidine diphosphate (dCDP)
(1)
D-Ribose 1,5-bisphosphate
(1)
Uridine diphosphate glucose(UDP-D-Glucose)
(1)
Alpha-D-Glucose 1-phosphate
(1)
N-Acetylglucosamine 1-phosphate
(1)
Guanosine diphosphate mannose
(1)
D-Mannose 1-phosphate
(1)
3-Methylphenylacetic acid
(1)
5-L-Glutamyl-L-alanine
(1)
Deoxyguanosine triphosphate (dGTP)
(1)
Adenosine 3',5'-diphosphate (PAP)
(1)
Tridecanoic acid (Tridecylic acid)
(1)
DL-lactate
(1)
D-Threitol
(1)
Undecanoic Acid
(1)
Pelargonic acid
(1)
Pyridoxamine 5'-phosphate
(1)
4-Hydroxycinnamic acid
(1)
N-Acetyl-L-glutamate
(1)
L-Alanine
(1)
2'-Deoxyuridine
(1)
Hydroxyphenyllactic acid
(1)
L-Proline
(1)
Folate
(1)
Erucic acid
(1)
Chenodeoxycholate
(1)
L-Malic acid
(1)
D-Erythrose 4-phosphate
(1)
Maleic acid
(1)
First Public Date
2025
(19)
2021
(18)
2022
(13)
2026
(11)
2024
(10)
2023
(10)
2014
(9)
2019
(4)
2020
(3)
2017
(3)
2015
(1)
2013
(1)
Study type
Transcription profiling by array
(582)
RNA-seq of coding RNA
(74)
Unknown experiment type
(29)
Comparative genomic hybridization by array
(22)
ChIP-seq
(12)
RNA-seq of non coding RNA
(10)
ChIP-chip by tiling array
(7)
Other
(7)
Methylation profiling by array
(7)
Transcription profiling by RT-PCR
(5)
Transcription profiling by SAGE
(4)
Transcription profiling by tiling array
(4)
Animal - High-throughput sequencing
(2)
Genotyping by array
(2)
Transcription profiling by MPSS
(1)
Differential
(1)
Human - One-color microarray
(1)
Proteomic profiling by array
(1)
RNA-seq of total RNA
(1)
Release Date
2015
(144)
2013
(127)
2010
(121)
2014
(114)
2011
(93)
2012
(92)
2022
(80)
2024
(68)
2025
(66)
2023
(66)
2020
(59)
2016
(58)
2021
(57)
2008
(44)
2019
(41)
2009
(30)
2018
(23)
2017
(22)
2007
(17)
2026
(7)
2005
(4)
2006
(2)
2004
(2)
Lab affiliation
Faculty of Health Sciences, University of Macau, Macau, China
(2)
Functional Proteomics, ICR
(1)
State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China 100871.
(1)
University of Udine
(1)
functionla proteomics, ICR
(1)
Tags
xref:PubMed:24553445
(5)
xref:PubMed:34289354
(4)
xref:PubMed:34815798
(4)
xref:PubMed:40067927
(4)
xref:PubMed:40411785
(3)
xref:PubMed:34389725
(2)
xref:PubMed:42323326
(2)
xref:PubMed:29513652
(2)
xref:PubMed:41922350
(2)
xref:PubMed:41040691
(2)
xref:PubMed:35641483
(1)
xref:PubMed:29649003
(1)
xref:PubMed:41520145
(1)
xref:PubMed:41781465
(1)
xref:PubMed:37697435
(1)
xref:PubMed:32164626
(1)
xref:PubMed:29249653
(1)
xref:PubMed:35561581
(1)
xref:PubMed:42189716
(1)
xref:PubMed:32980128
(1)
xref:PubMed:39886906
(1)
xref:PubMed:40261702
(1)
xref:PubMed:30445628
(1)
xref:PubMed:39994444
(1)
xref:PubMed:28211448
(1)
xref:PubMed:42491848
(1)
xref:PubMed:25719666
(1)
xref:PubMed:22445484
(1)
xref:PubMed:37067532
(1)
xref:PubMed:39901592
(1)
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DNA nicks induce mutational signatures associated with BRCA1 deficiency.
Not available
S-EPMC9314409
|
biostudies-literature
Cite
PARP Inhibition Exacerbates Tumor-autonomous Immunogenicity Driven by BRCA1 Deficiency through DNA Sensing and Interferon Response in Ovarian Cancer
PARP Inhibition Exacerbates Tumor-autonomous Immunogenicity Driven by BRCA1 Deficiency through DNA Sensing and Interferon Response in Ovarian Cancer
PRJNA494555
|
ENA
Cite
HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures.
Not available
S-EPMC5833945
|
biostudies-literature
Cite
BRCA1 Deficiency Impairs Mitophagy and Promotes Inflammasome Activation and Mammary Tumor Metastasis.
Not available
S-EPMC7080549
|
biostudies-literature
Cite
ATM-Chk2-p53 activation prevents tumorigenesis at an expense of organ homeostasis upon Brca1 deficiency.
Not available
S-EPMC1462967
|
biostudies-literature
Cite
Class I histone deacetylase inhibition is synthetic lethal with BRCA1 deficiency in breast cancer cells.
Not available
S-EPMC7161709
|
biostudies-literature
Cite
Identification of BRCA1 Deficiency Using Multi-Analyte Estimation of BRCA1 and Its Repressors in FFPE Tumor Samples from Patients with Triple Negative Breast Cancer.
Not available
S-EPMC4831669
|
biostudies-literature
Cite
BRCA1 deficiency specific base substitution mutagenesis is dependent on translesion synthesis and regulated by 53BP1.
Not available
S-EPMC8752635
|
biostudies-literature
Cite
BRCA1 and TP53 Co-Deficiency Causes a PARP-inhibitor Sensitive Erythroproliferative Neoplasm
PRJNA887455
|
ENA
Cite
NOTCH1 activation compensates BRCA1 deficiency and promotes triple-negative breast cancer formation.
Not available
S-EPMC7320176
|
biostudies-literature
Cite
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