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TranscriptomicsGene expression in three stages of ripening tomato fruit
Gene expression in three stages of ripening tomato fruit (variety Ailsa Craig) was determined with the EUTOM3 Affymetrix array in order to compare with degradrome sequencing data from study GSE42661, treated as RNAseq. three replicates of each stage (MG, mature green; T, turning/breaker; RR, red rip...
ORGANISM(S): Solanum lycopersicum 
2013-04-05 | E-GEOD-42783 | biostudies-arrayexpress
TranscriptomicsIn Silico transcriptional regulatory networks during tomato fruit ripening
The aim of this study is to generate gene regulatory networks by analyzing Affymetrix GeneChip expression datasets from four different stages of tomato fruit ripening, Breaker (Br), Turning (Tu), Pink (Pk) and Red Ripe (RR) with the LeMoNe algorithm in order to identify co expression modules and the...
ORGANISM(S): Solanum lycopersicum 
2017-02-09 | GSE78733 | GEO
ProteomicsTomato phototropin1 fruit proteome
Tomato phototropin1 mutant exhibits deep red color in the ripe fruits compared to the wild type. However, the mechanisms governing this intense fruit coloration in the mutant are largely unknown. Therefore, a proteomic approach combined with carotenoid profiling and carotenogenic gene expression was...
ORGANISM(S): Solanum lycopersicum 
2021-02-24 | PXD018150 | Pride
Mature green Breaker and red ripe stages of ripening Chlorophyll degradation Tomato fruit proteome Carotenoids 
TranscriptomicsExpression data from tomato fruit at three ripening stages (MG, Br, B10) in wild type lines (Alsa Craig, AC, and M82) and five tomato carotenoid mutants: apricot (at), yellow flesh (r), tangerine (t), Beta (B), and Delta (Del).
Carotenoids are essential natural compounds for human nutrition and play key roles in plants as photosynthetic pigments and as precursors of hormones and apocarotenoids. Tomato is a major model for carotenoid metabolism, where genetic variation strongly influences carotenoid composition during fruit...
ORGANISM(S): Solanum lycopersicum 
2026-06-03 | GSE327902 | GEO
GenomicsSolanum lycopersicum
Gene expression in three stages of ripening tomato fruit
PRJNA183126 | ENA
UnknownIn silico Transcriptional Regulatory Networks Involved in Tomato Fruit Ripening.
Not available
S-EPMC5003879 | biostudies-literature
GenomicsSolanum lycopersicum
In Silico transcriptional regulatory networks during tomato fruit ripening
PRJNA313357 | ENA
ProteomicsTomato trifoliate mutant proteome
Tomato trifoliate 5 mutant exhibits high carotenoid and folate levels. However, the mechanisms governing high carotenoid and folate levels of the mutant are largely unknown. Therefore, a proteomic approach combined with metabolite profiling and gene expression was used to decipher the effect of muta...
ORGANISM(S): Solanum lycopersicum 
2022-08-12 | PXD027940 | Pride
Mature green Breaker and red ripe stages of ripening Carotenoids and folates. Tomato fruit proteome 
GenomicsExpression data from tomato fruit at three ripening stages (MG, Br, B10) in wild type lines (Alsa Craig, AC, and M82) and five tomato carotenoid mutants: apricot (at), yellow flesh (r), tangerine (t), Beta (B), and Delta (Del).
Expression data from tomato fruit at three ripening stages (MG, Br, B10) in wild type lines (Alsa Craig, AC, and M82) and five tomato carotenoid mutants: apricot (at), yellow flesh (r), tangerine (t), Beta (B), and Delta (Del).
PRJNA1452962 | ENA
GenomicsThe dynamic N1-methyladenosine methylome of RNA provides insights intotheregulation oftomato fruit ripening
The dynamic N1-methyladenosine methylome of RNA provides insights intotheregulation oftomato fruit ripening
PRJNA1131000 | ENA
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