Brg1 - OmicsDI

Show results for

Genomics (967)
Transcriptomics (964)
Unknown (630)
Proteomics (80)
Other (34)
Metabolomics (8)
Methylation profiling (6)

Organisms

Mus musculus (481)
Homo sapiens (448)
Arabidopsis thaliana (40)
Drosophila melanogaster (36)
Rattus norvegicus (35)
Danio rerio (35)
Caenorhabditis elegans (33)
Saccharomyces cerevisiae (23)
Pimephales promelas (11)
Salmo salar (11)
Methanococcus maripaludis S2 (9)
Oncorhynchus mykiss (9)
Gallus gallus (9)
Candida albicans (9)
Bos taurus (7)
Schizosaccharomyces pombe (6)
Mycobacterium tuberculosis (6)
Escherichia coli (6)
Oryza sativa (5)
Bacillus subtilis (5)
Apis mellifera (5)
Zea mays (4)
Petrolisthes cinctipes (3)
Aplysia californica (3)
Platichthys flesus (3)
Lepidium sativum (3)
Cyprinus carpio (3)
Glycine max (3)
Miscanthus sinensis (2)
Drosophila serrata (2)

Organisms

Mus musculus (300)
Homo sapiens (244)
Candida albicans (7)
Danio rerio (6)
Xenopus tropicalis (2)
Sus scrofa (2)
Rattus norvegicus (2)
Lodderomyces parapsilosis (1)

Repository

biostudies-arrayexpress (781)
ENA (634)
geo (527)
pride (34)
MassIVE (30)
EGA (26)
jPOST (16)
MetaboLights (8)
iProX (2)
PanoramaPublic (2)
ExpressionAtlas (1)
GPMDB (1)

Tissue

Cell culture (12)
Permanent cell line cell (4)
Embryonic stem cell (2)
Stem cell (2)
Mammary gland epithelial cell (1)
Squamous cell of epidermis (1)
Breast cancer cell (1)
Prostate cancer cell line (1)
Spleen (1)
Fibroblast (1)
Primary cell (1)
Epithelial cell (1)
Liver (1)
Monocyte (1)
Blood cell (1)

Disease

Normal (3)
Acute leukemia (3)
Breast cancer (2)
Cardiovascular system disease (2)
Brain cancer (2)
S. mansoni - exposed (1)
Schistosome-exposed (1)
Apert syndrome (1)
Mock 24 h (1)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
Rheumatoid arthritis (1)
None- acute control (1)
Benign adenoma (1)
Cancer (1)
None- Acute Control (1)
N/a (1)
Invasive ductal carcinoma (1)
Not Available (1)
Rhabdoid cancer (1)
Epithelioid sarcoma (1)
Skin cancer (1)
Cell type cancer (1)
Chronic myeloid leukemia (1)
Disease free (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (10)
Mass spectrometry (7)
Data-dependent acquisition (3)
NextSeq 500, Illumina HiSeq 2000, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Mass spectrometry assay (1)
MSE (1)
SWATH MS (1)
Gel-based experiment (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (21)
Illumina HiSeq 2500 (10)
Illumina HiSeq 2000 (8)
Illumina HiSeq 4000 (8)
NextSeq 500 (6)
ArrayWoRx Biochip Reader [Applied Precision] (5)
Axon- GenePix4000B (3)
Illumina NovaSeq X (3)
NextSeq 2000 (3)
GenePix 4000A [Axon Instruments] (2)
Affymetrix (2)
NextSeq 550 (2)
NanoString nCounter (1)
Growth chamber, fridge (1)
Real Time qPCR System, Thermocycler (1)
Leica CM3050 S (cryostat), Leica Microsystems (microscope) (1)
GeneChip® Scanner 3000 7G (Affymetrix) (1)
Axon GenePix4000B (1)
Agilent® 2100 Bioanalyzer Instrument (1)
None (1)
QuantStudioTM 12K Flex system (1)
In Silico Molecular Cloning Program (1)
Sequel (1)
Ion Torrent S5 (1)
Nanodrop N1000 spectrophotometer (1)
Illumina Bead Array (1)
Invitrogen; Thermo Scientific (1)
Agilent 2100 Bioanalyzer (1)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)

Publication Date

2013 (134)
2010 (123)
2024 (93)
2015 (92)
2025 (91)
2021 (83)
2012 (81)
2016 (74)
2014 (74)
2023 (72)
2011 (71)
2026 (67)
2022 (57)
2019 (52)
2020 (47)
2008 (41)
2009 (40)
2005 (38)
2017 (30)
2007 (19)
2018 (12)
2006 (6)
2003 (1)
2002 (1)

CHEBI ID

CHEBI:16742 (3)
CHEBI:33946 (2)
CHEBI:30818 (2)
CHEBI:28595 (2)
CHEBI:90242 (2)
CHEBI:70766 (2)
CHEBI:25351 (2)
CHEBI:176478 (2)
CHEBI:1606 (2)
CHEBI:604731 (2)
CHEBI:8087 (2)
CHEBI:90344 (2)
CHEBI:133532 (2)
CHEBI:68505 (2)
CHEBI:85533 (2)
CHEBI:133559 (2)
CHEBI:133186 (2)
CHEBI:68443 (2)
CHEBI:28997 (2)
CHEBI:71018 (2)
CHEBI:45969 (2)
CHEBI:30817 (2)
CHEBI:46215 (2)
CHEBI:68561 (2)
CHEBI:84415 (2)
CHEBI:45441 (2)
CHEBI:17768 (2)
CHEBI:49006 (2)
CHEBI:138368 (2)
CHEBI:58148 (2)

Metabolite Name

N6-acetyllysine (2)
3-methyl-2-oxobutyrate (2)
Histidine (2)
Leucine (2)
Guanosine (2)
Guanine (2)
Adenine (2)
2-hydroxyglutarate (2)
Orotate (2)
Adenosine (2)
Beta-alanine (2)
Uracil (2)
Valine (2)
Phenylacetylglutamine (2)
Homocitrulline (2)
Carnosine (2)
Glutathione (2)
Allantoin (2)
Methionine sulfoxide (2)
Methionine (2)
Taurine (2)
DTMP (2)
Lysine (2)
Asparagine (2)
Serine (2)
Mannose (2)
Fructose (2)
Alanine (2)
Threonine (2)
Sarcosine (2)

First Public Date

2024 (116)
2021 (70)
2025 (64)
2026 (60)
2023 (60)
2022 (55)
2019 (48)
2014 (34)
2020 (30)
2017 (29)
2013 (27)
2015 (16)
2016 (13)
2018 (12)

Classification

fungi (8)

Study type

Transcription profiling by array (438)
RNA-seq of coding RNA (74)
ChIP-seq (67)
Transcription profiling by tiling array (49)
Methylation profiling by array (22)
Unknown experiment type (16)
RNA-seq of coding RNA from single cells (16)
RNA-seq of non coding RNA (16)
ChIP-chip by tiling array (11)
Other (10)
ChIP-chip by array (8)
Comparative genomic hybridization by array (8)
Genotyping by array (6)
Methylation profiling by high throughput sequencing (6)
Transcription profiling by RT-PCR (4)
Single nucleus RNA sequencing (4)
Spatial transcriptomics by high-throughput sequencing (3)
ATAC-seq (3)
MicroRNA profiling by array (3)
RNAi profiling by array (2)
Capture-C (2)
Bisulfite-seq (2)
Cell line - Two-color microarray (1)
Plant - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Translation profiling (1)
Ribo-seq (1)
ScATAC-seq (1)
DNA-seq (1)
CUT&RUN (1)

Release Date

2010 (135)
2013 (132)
2015 (103)
2014 (101)
2016 (97)
2012 (93)
2011 (81)
2021 (62)
2023 (59)
2022 (59)
2009 (54)
2025 (51)
2020 (51)
2024 (49)
2008 (46)
2017 (44)
2019 (43)
2018 (42)
2005 (41)
2007 (22)
2026 (19)
2006 (12)
2003 (5)
2002 (5)
2004 (3)
1998 (1)

Lab affiliation

Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (3)
Leukemia Department, MD Anderson Cancer Center, Houston, TX 77030 (2)
School of Life Sciences, Tsinghua University, China (2)
Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla California 92037 USA (1)
IGFL, ENS de Lyon, CNRS UMR 5242, Université Lyon1, INRA USC1370, France (1)
Professor of Pharmaceutical Sciences & Moulder Center for Drug Discovery Professor Lewis Katz School of Medicine Member Fox Chase Cancer Institute Director of Proteomics/Metabolomics Temple University School of Pharmacy 3307 N Broad Street Room 552 Philadelphia, PA 19140 Tel: 215 707 9228 (1)
Sahlgrenska Academy, University of Gothenburg, Sweden (1)
Department of Environmental, Biological and Pharmaceutical Sciences and Technologies, University of Campania “Luigi Vanvitelli”, 81100 Caserta, Italy (1)
Stanford University School of Medicine 279 Campus Drive Stanford, CA 94305-5323 (1)
Proteomics Unit, CNIO (1)
Celleluar and Molecular Pharmacology, UCSF (1)
Co-Director – Mass Spectrometry Research and Support Group National Institute of Environmental Health Sciences 111 TW Alexander Drive MD F0-04 Research Triangle Park, North Carolina 27709 Phone: (984) 287-3374 (1)
Department of Rheumatology and Inflammation research, Sahlgrenska academy, Gothenburg University, Gothenburg, Sweden (1)
Erasmus MC, Rotterdam - NL (1)
Department of Molecular Biology, Faculty of Science Radboud Institute for Molecular Like Sciences, Radboud University Nijmegen, Nijmegen, 6525 GA, The Netherlands (lab head) (1)
Emory Univerity (1)
Division of Translational Pediatric Sarcoma Research German Cancer Research Center (DKFZ) Im Neuenheimer Feld 280, 69120 Heidelberg, Germany (1)
Cancer Research UK University of Cambridge Li Ka Shing Centre Robinson Way Cambridge, CB2 0RE (1)
Sahlgrenska Center for Cancer Research Department of Laboratory Medicine Institute of Biomedicine Sahlgrenska Academy at University of Gothenburg Gothenburg, Sweden (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14 AKH BT 25.3 1090 Vienna, Austria (1)
Harbin Medical University, Histology and embryology (1)
Université Libre de Bruxelles Institute for Medical Immunology (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Department of Oncology and Pathology, Karolinska Institutet, Scilifelab, Stockholm, Sweden (1)
University of California San Francisco (1)
Institute of Cancer Research, London (1)
Departement for Biomedical Research University of Bern Switzerland (1)
University of Edinburgh (1)
Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland (1)
Cornell University (1)

Previous page
1 / 270
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 270
Next page

Sort by:

Relevance

Page size

Brg1 promotes both tumor suppressive and oncogenic activities at distinct stages of Pancreatic cancer formation

Pancreatic Ductal Adenocarcinoma (PDA) develops predominantly through pancreatic intraepithelial neoplasia (PanIN) and intraductal papillary mucinous neoplasm (IPMN) precursor lesions. Pancreatic acinar cells are reprogrammed to a “ductal like” state during PanIN-PDA formation. Here, we demonstrate ...

ORGANISM(S): Mus musculus

2015-07-29 | E-GEOD-65315 | biostudies-arrayexpress

Brg1 Modulates Enhancer Activation and Polycomb-mediated Repression in Mesoderm Differentiation [ChIP-exo]

We investigated the genome-wide occupancy changes in normal and Brg1-deleted mesoderm differentiation of mouse embryonic stem cells of chromatin regulators and histone modifications. ChIP exo for BRG1 in 2 conditions: Day4 THF (Control) and Day4 4OHT (Brg1-deleted). 1-2 replicates per condition.

ORGANISM(S): Mus musculus

2015-03-01 | E-GEOD-63976 | biostudies-arrayexpress

Chromatin remodeling enzyme Brg1 is required for mouse lens fiber cell terminal differentiation and their denucleation [lens tissue]

Genome-wide approach to identify the cell-autonomous role of Brg1 in lens fiber cell terminal differentiation. To examine roles of Brg1 in mouse lens development, a dnBrg1 transgenic construct was expressed using the lens-specific alphaA-crystallin promoter in postmitotic lens fiber cells. Morpholog...

ORGANISM(S): Mus musculus

2011-01-01 | E-GEOD-22322 | biostudies-arrayexpress

Dynamic BRG1 Recruitment During T Helper Differentiation And Activation Reveals Distal Regulatory Elements

We found binding of the remodeling protein BRG1 was programmed by lineage and activation signals. BRG1 binding was positively correlated with gene activity at protein-coding and miRNA genes. BRG1 binding was found at promoters and distal regions, including known and novel distal regulatory element...

ORGANISM(S): Mus musculus

2011-03-01 | E-GEOD-23719 | biostudies-arrayexpress

Proteomic analysis using BRG1-phosphorylation mutants

Proteins extracted from stable clones expressing wild-type, phosphorylation-mimic (brg1-S1452D), or non-phosphorylatable BRG1 (brg1-S1452A) were trypsin-digested and analyzed by Q Exactive Quadrupole-Orbitrap LC-MS.

ORGANISM(S): Homo Sapiens (human)

2021-11-24 | PXD022681 | JPOST Repository

BRG1 recruitment by transcription factors MITF and SOX10 defines a specific configuration of regulatory elements in the melanocyte lineage (ChIP-seq)

Microphthalmia-associated transcription factor (MITF) is the master regulator of the melanocyte lineage. By tandem affinity purification and mass spectrometry, we present a comprehensive characterisation of the MITF interactome comprising multiple novel cofactors involved in transcription, DNA repli...

ORGANISM(S): Homo sapiens

2015-04-02 | E-GEOD-61965 | biostudies-arrayexpress

MS analysis of phosphopeptides enriched from BRG1-phospho mutants

Phosphopeptides enriched from stable clones expressing wild-type, phosphorylation-mimic (brg1-S1452D), or non-phosphorylatable BRG1 (brg1-S1452A) were analyzed by Q Exactive Quadrupole-Orbitrap LC-MS.

ORGANISM(S): Homo Sapiens (human)

2021-11-24 | PXD022680 | JPOST Repository

Transcription profiling of mouse mammary tumors from Brg1 heterozygotes

Mammalian SWI/SNF-related complexes have been implicated in cancer based on some of the subunits physically interacting with RB and other proteins involved in carcinogenesis. Additionally, several subunits are mutated or not expressed in tumor-derived cell lines. Strong evidence for a role in tumori...

ORGANISM(S): Mus musculus

2008-06-18 | E-GEOD-8516 | biostudies-arrayexpress

Target genes of BRG1 in human embryonic stem cells

BRG1-SWI/SNF complex is an important chromatin remodeling complex that involved in various biological processes. Here we described the genome-wide binding of histone acetylation upon BRG1 depletion in human embryonic stem cells. Human embryonic stem cells were treated with either scrambled siRNA or ...

ORGANISM(S): Homo sapiens

2015-04-28 | E-GEOD-57473 | biostudies-arrayexpress

Target genes of BRG1 in mouse embryonic stem cells

BRG1-SWI/SNF complex is an important chromatin remodeling complex that involved in various biological processes. Here we described the genome-wide binding of histone acetylation upon BRG1 depletion in mouse embryonic stem cells. Mouse embryonic stem cells were treated with either scrambled siRNA or ...

ORGANISM(S): Mus musculus

2015-04-28 | E-GEOD-57472 | biostudies-arrayexpress

Previous page
1 / 270
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 270
Next page

Sort by:

Relevance

Page size

2692 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Classification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets