Brooks J J - OmicsDI

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Unknown (2566)
Transcriptomics (61)
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Organisms

Homo sapiens (59)
Mus musculus (11)
Arabidopsis thaliana (5)
Saccharomyces cerevisiae (4)
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Escherichia coli str. K-12 substr. MG1655 (1)
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Repository

biostudies-arrayexpress (65)
pride (20)
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Mass Spectrometry (20)
Shotgun proteomics (14)
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Mass spectrometry (1)
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Instrument Platform

Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
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NextSeq 500 (1)
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Publication Date

2010 (11)
2006 (9)
2005 (8)
2008 (7)
2011 (6)
2023 (6)
2015 (5)
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2007 (5)
2013 (4)
2009 (3)
2016 (2)
2014 (2)
2012 (2)
2004 (2)
2025 (2)
2020 (2)
2018 (2)

CHEBI ID

CHEBI:1148 (1)
CHEBI:139123 (1)
CHEBI:15318 (1)
CHEBI:15611 (1)
CHEBI:15621 (1)
CHEBI:15741 (1)
CHEBI:15753 (1)
CHEBI:15756 (1)
CHEBI:15940 (1)
CHEBI:16027 (1)
CHEBI:16104 (1)
CHEBI:16113 (1)
CHEBI:16196 (1)
CHEBI:16235 (1)
CHEBI:16265 (1)
CHEBI:16335 (1)
CHEBI:16414 (1)
CHEBI:16566 (1)
CHEBI:16643 (1)
CHEBI:16704 (1)
CHEBI:16708 (1)
CHEBI:16737 (1)
CHEBI:16750 (1)
CHEBI:16753 (1)
CHEBI:16797 (1)
CHEBI:16828 (1)
CHEBI:16857 (1)
CHEBI:17015 (1)
CHEBI:17016 (1)
CHEBI:17053 (1)

Metabolite Name

(S)-2,3,4,5-tetrahydropyridine-2-carboxylate (1)
(S)-5-Amino-3-oxohexanoate (1)
1-Aminocyclopropanecarboxylic acid (1)
1-Methylnicotinamide (1)
2-Hydroxy-2-ethylsuccinic acid (1)
2-Hydroxybutyric acid (1)
25-Hydroxycholesterol (1)
3-(2-Hydroxyphenyl)propanoic acid (1)
4-Hydroxyphenylacetaldehyde (1)
4-Pyridoxic acid (1)
5-Hydroxylysine (1)
5-Methylthioadenosine (1)
5-S-Methyl-5-thioinosine (1)
AMP (1)
Adenine (1)
Adenosine (1)
Aminoadipic acid (1)
Argininosuccinic acid (1)
Benzoate (1)
CMP (1)
Cholesterol (1)
Citrulline (1)
Creatinine (1)
Dehydroepiandrosterone (1)
Dimethylglycine (1)
Guanine (1)
Guanosine (1)
Hypoxanthine (1)
Indole (1)
Inosine (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (32)
Unknown experiment type (18)
ChIP-seq (4)
RNA-seq of coding RNA (4)
Transcription profiling by tiling array (3)
Comparative genomic hybridization by array (3)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (266)
2022 (257)
2024 (241)
2023 (224)
2025 (218)
2020 (200)
2018 (161)
2019 (143)
2016 (126)
2017 (125)
2015 (118)
2014 (93)
2013 (88)
2011 (64)
2012 (62)
2026 (52)
2010 (49)
2008 (29)
2009 (28)
2006 (21)
2005 (19)
2007 (18)
2004 (13)
2003 (6)
2002 (3)
2001 (2)
1999 (2)
1998 (2)
2000 (1)

Lab affiliation

Aarhus University Department of Biomedicine DK-8000 Aarhus C (3)
Wellcome Trust Sanger Institute (2)
1)Program for Predictive and Personalized Medicine of Cancer, Germans Trias i Pujol Research Institute (PMPPC-IGTP), 08916 Badalona, Spain 2)Cancer and Leukemia Epigenetics and Biology Program, Josep Carreras Leukaemia Research Institute (IJC), Campus ICO-GTP-UAB, 08916 Badalona, Spain (1)
Dana-Farber Cancer Institute, 450 Brookline Ave, Boston, MA 02215 (1)
Department of Biochemistry and Molecular Biology & Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (1)
Department of Laboratory Medicine and Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, United States of America (1)
Department of Obstetrics, Gynecology, and Reproductive Sciences, Center for Reproductive Sciences, University of California, San Francisco, CA 94143, USA Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA Department of Anatomy, University of California, San Francisco, CA 94143, USA (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Palo Alto, CA USA (1)
Institute of Cancer Research, London (1)
Laboratoire de Spectrométrie de Masse Protéomique (LSMP) Institut Curie (1)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524 (1)
Professor, Depts of Physiology, Pharmacology, Nephrology/Medicine, Member, BIO5/Arizona Center on Aging/Sarver Heart Center, University of Arizona College of Medicine (1)
UCL Biological Mass Spectrometry Lab Head GOSH University College London London Tel +44(0)7809621264 (1)
University Hospital Cologne (1)
University of Greifswald, Institue for Microbiology (1)
University of Illinois Chicago, Department of Physiology and Biophysics (1)

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In vivo imaging of synaptic SV2A protein density in healthy and striatal-lesioned rats with [11C]UCB-J PET.

Not available

S-EPMC7983510 | biostudies-literature

Mutations in conserved regions of the predicted RAG2 kelch repeats block initiation of V(D)J recombination and result in primary immunodeficiencies.

Not available

S-EPMC86034 | biostudies-literature

Reply to Comments by Yih et al. (Exposure to Hantavirus is a Risk Factor Associated with Kidney Diseases in Sri Lanka: A Cross-Sectional Study).

Not available

S-EPMC6949920 | biostudies-literature

Transcriptome dynamics of developing photoreceptors in 3-D retina cultures recapitulates temporal sequence of human cone and rod differentiation revealing cell surface markers and gene networks

To define molecular mechanisms underlying rod and cone differentiation, we generated H9 human embryonic stem cell line carrying a GFP reporter that is controlled by the promoter of cone-rod homeobox (CRX) gene, the first known marker of post-mitotic photoreceptor precursors. CRXp-GFP reporter in H9 ...

ORGANISM(S): Homo sapiens

2015-08-03 | E-GEOD-67645 | biostudies-arrayexpress

Chronic ethanol-mediated hepatocyte apoptosis links to decreased TET1 and 5-hydroxymethylcytosine formation.

Not available

S-EPMC6338639 | biostudies-literature

Molecular structure of a 9-MDa icosahedral pyruvate dehydrogenase subcomplex containing the E2 and E3 enzymes using cryoelectron microscopy.

Not available

S-EPMC1647297 | biostudies-literature

Loss of growth hormone-mediated signal transducer and activator of transcription 5 (STAT5) signaling in mice results in insulin sensitivity with obesity.

Not available

S-EPMC6463913 | biostudies-literature

Transcription profiling of S. cerevisiae during prolonged maltose limited cultivation

Prolonged cultivation (>25 generations) of Saccharomyces cerevisiae in aerobic, maltose-limited chemostat cultures led to profound physiological changes. Maltose hypersensitivity was observed when cells from prolonged cultivations were suddenly exposed to excess maltose. This substrate hypersensitiv...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-16 | E-GEOD-8897 | biostudies-arrayexpress

Not available

S-EPMC165816 | biostudies-literature

Longitudinal study of viruses associated with canine infectious respiratory disease.

Not available

S-EPMC522361 | biostudies-literature

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