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TranscriptomicsTransfer of clinically relevant gene expression signatures in breast cancer: from Affymetrix microarray to Illumina RNA-Sequencing technology
Microarrays have revolutionized breast cancer (BC) research by enabling studies of gene expression on a transcriptome-wide scale. Recently, RNA-Sequencing (RNA-Seq) has emerged as an alternative for precise readouts of the transcriptome. To date, no study has compared the ability of the two technolo...
ORGANISM(S): Homo sapiens 
2014-11-21 | E-GEOD-43358 | biostudies-arrayexpress
UnknownClinical characteristics, racial inequities, and outcomes in patients with breast cancer and COVID-19: A COVID-19 and cancer consortium (CCC19) cohort study.
Not available
S-EPMC10637772 | biostudies-literature
GenomicsRNA Editing in breast cancer
High-throughput sequencing screens suggest that RNA editing, which consists in the substitution of adenosine with inosine by the RNA-specific adenosine deaminase (ADAR) enzyme, occurs at several thousand positions across the human genome. Recent evidences have shown that RNA-editing could promote pr...
EGAS00001000495 | EGA
TranscriptomicsFormaldehyde-induced changes in microRNA signaling [Affymetrix]
In addition to gaining knowledge on in vivo miRNA responses to formaldehyde, we set out to relate these miRNA responses to transcriptional profiles modified by formaldehyde. Rats were exposed by inhalation to either 0 or 2 ppm formaldehyde (6 hours/day) for 28 days. Genome-wide transcriptional profi...
ORGANISM(S): Rattus norvegicus 
2014-01-07 | E-GEOD-42394 | biostudies-arrayexpress
TranscriptomicsFormaldehyde-induced changes in microRNA signaling [Agilent]
MicroRNAs (miRNAs) are critical regulators of gene expression, yet much remains unknown regarding miRNA changes resulting from environmental exposures and whether they influence pathway signaling across various tissues and time. To gain knowledge on these novel topics, we set out to investigate in v...
ORGANISM(S): Rattus norvegicus 
2014-01-07 | E-GEOD-42393 | biostudies-arrayexpress
GenomicsRNA Editing Genotype
Genotyping using Affymetrix SNP6.0
EGAD00010000847 | EGA
Genomicsena-DATASET-BCTL-03-07-2013-15:15:20:064-67 - samples
Transcriptome sequencing data of tumor and 10 matched normal samples of the EGAS00001000495 project
EGAD00001000627 | EGA
Genomicsena-DATASET-BCTL-18-12-2013-16:40:05:306-137 - samples
AZIN1 amplicon sequencing data of the EGAS00001000495 project.
EGAD00001000708 | EGA
Genomicsena-DATASET-BCTL-03-07-2013-15:06:18:127-64 - samples
Exome sequencing data for tumor and matched normal samples of the EGAS00001000495 project.
EGAD00001000626 | EGA
GenomicsDATA ACCESS COMMITTEE BCTL-IRIBHM
Data Access Committee EGAC00001000120
EGAC00001000120 | EGA
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