Brown Ian S IS - OmicsDI

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Transcriptomics (16)
Unknown (9)
Genomics (3)
Metabolomics (3)
Models (2)

Organisms

Homo sapiens (11)
Rattus norvegicus (4)
Mus musculus (2)
Severe acute respiratory syndrome-related coronavirus (1)
Escherichia coli (1)
Chlamydomonas reinhardtii (1)
Mesocricetus auratus (1)
Acinetobacter baumannii (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (17)
MetaboLights (3)
BioModels (2)
EGA (2)

Technology Type

Mass spectrometry (3)

Instrument Platform

Illumina HiSeq 2000 (2)
SYNAPT HDMS (Waters) (2)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
GCMS-QP2010 Plus (Shimadzu) (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2010 (4)
2015 (3)
2011 (3)
2024 (2)
2017 (2)
2016 (2)
2009 (2)
2021 (1)
2013 (1)
2008 (1)
2025 (1)

CHEBI ID

CHEBI:87766 (2)
CHEBI:48541 (2)
CHEBI:18292 (2)
CHEBI:16914 (2)
CHEBI:16243 (2)
CHEBI:55334 (1)
CHEBI:136935 (1)
CHEBI:136948 (1)
CHEBI:27842 (1)
CHEBI:136946 (1)
CHEBI:136950 (1)
CHEBI:136954 (1)
CHEBI:136951 (1)
CHEBI:136926 (1)
CHEBI:136953 (1)
CHEBI:136955 (1)
CHEBI:136930 (1)
CHEBI:136922 (1)
CHEBI:47791 (1)
CHEBI:50703 (1)
CHEBI:136945 (1)
CHEBI:136942 (1)
CHEBI:136952 (1)
CHEBI:136944 (1)
CHEBI:136939 (1)
CHEBI:28311 (1)
CHEBI:36529 (1)
CHEBI:80475 (1)
CHEBI:3293|CHEBI:614 (1)
CHEBI:16112|CHEBI:16065 (1)

Metabolite Name

Salicylic acid (2)
Pelargonidin 3-O-rutinoside-5-O-beta-D-glucoside (anthocyanin) (1)
1,2-bis-O-Sinapoyl-beta-D-glucoside (1)
Delphinidin 3-O-(6''-O-malonyl)-β-glucoside (anthocyanin) (1)
Quercetin 3-β-D-glucoside (flavonoid) (1)
Coumaric acid-β-D-glucoside (1)
2,5-Dihydroxybenzoate 2-O-β-D-glucoside (1)
Cinnamoyl beta-D-glucoside (1)
8-(Methylthio)octylisothiocyanate (1)
4-Methoxy-3-indolylmethylamine (1)
Gluconasturtiin (2-phenethyl glucosinolate) (1)
Glucotropaeolin (benzyl glucosinolate) (1)
Glucohirsutin (methylsulfinyloctyl glucosinolate) (1)
Glucoibarin (methylsulfinylheptyl glucosinolate) (1)
Glucohesperin (methylsulfinylhexyl glucosinolate) (1)
Glucoalyssin (methylsulfinylpentyl glucosinolate) (1)
Glucolesquerellin (6-methylthiohexyl glucosinolate) (1)
Glucoraphanin (methylsulfinylbutyl glucosinolate) (1)
Glucoberteroin (methylthiopentyl glucosinolate) (1)
Progoitrin (2-hydroxy-3-butenyl glucosinolate) (1)
Sinigrin (propenyl glucosinolate) (1)
Gluconapin (butenyl glucosinolate) (1)
9-Methylthiononylhydroximoyl-L-cysteine (1)
2-Oxo-9-methylthiononanoate (1)
2-Oxo-6-methylthiohexanoate (1)
Sulfoglucobrassicin (N-sulfoindol-3-yl)-methyl glucosinolate) (1)
Glucobrassicin (indol-3-ylmethyl glucosinolate, I3G) (1)
7-Methylthioheptyl-desulfoglucosinolate (1)
Desulfoglucobrassicin (indolylmethyl-desulfoglucosinolate) (1)
Desulfoglucoberteroin (5-methylthiopentyl-desulfoglucosinolate) (1)

IsPrivate

False (2)

Submitter Keywords

Ersilia (2)
Machine Learning Model (2)

Modelling Approach

Computational model (2)

Study type

Transcription profiling by array (8)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
ChIP-chip by tiling array (1)
Ribo-seq (1)
Other (1)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2010 (4)
2016 (3)
2011 (3)
2021 (2)
2015 (2)
2009 (2)
2026 (2)
2017 (1)
2013 (1)
2008 (1)
2025 (1)
2024 (1)
2023 (1)
2020 (1)
2014 (1)

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Polyphenolic Profiling of Plants and Edible Mushrooms to Aid Characterizing Polyphenol Oxidase Selectivity

Polyphenol oxidases are important metalloenzymes that catalyze the oxidation of polyphenols. Organisms can contain multiple isoenzymes whose possible different functionality is not understood. Moreover, their substrate preference is still unexplored, and a working hypothesis assumes their specifi...

2025-08-07 | MTBLS8782 | MetaboLights

Scl-Ab: Exploratory 26-Week Subcutaneous Toxicology Study in the Aged Ovariectomized Female Sprague Dawley Rat with an 18-week Recovery

This study is designed to compare and contrast the temporal and spatial changes in bone formation rates and transcriptional profiles in cortical and cancellous bone cell populations enriched by laser capture microdissection (LCM) in ovariectomized rats administered Scl-Ab by subcutaneous injection f...

ORGANISM(S): Rattus norvegicus

2016-01-06 | E-GEOD-71306 | biostudies-arrayexpress

Controlled Delivery of Paclitaxel via Stable Synthetic Protein Nanoparticles.

Not available

S-EPMC11580025 | biostudies-literature

The Lipopolysaccharide-Induced Metabolome Signature in Arabidopsis thaliana Reveals Dynamic Reprogramming of Phytoalexin and Phytoanticipin Pathways

Lipopolysaccharides (LPSs), as MAMP molecules, trigger the activation of signal transduction pathways involved in defence. Currently, plant metabolomics is providing new dimensions into understanding the intracellular adaptive responses to external stimuli. The effect of LPS on the metabolomes of Ar...

2017-05-03 | MTBLS272 | MetaboLights

ZMYM2-WT, ZMYM2-SIM2mut, and FOXO3 ChIP-seq in a U2OS stable cell line

Chromatin immuno-precipitation using anti-Flag (Sigma) or control IgG (Millipore) antibodies in a U2OS stable cell line. ZMYM2 has the synonym ZNF198. Note: paired-end sequencing libraires were created in this experiment but only the forward (R1) reads are available in this submission. The 'LIBRA...

ORGANISM(S): Homo sapiens

2015-06-23 | E-MTAB-2701 | biostudies-arrayexpress

Comparative transcriptional analysis of Acinetobacter baumannii strain ATCC 17978 and strain 17978hm

In this study the transcriptomes of Acinetobacter baumannii strains ATCC 17978 and 17978hm were compared. Strain 17978hm is a hns knockout derivative of strain ATCC 17978. Strain 17978hm displays a hyper-motile phenotype on semi-solid Mueller-Hinton (MH) media (0.25% agar). ATCC 17978 and 17978hm fr...

ORGANISM(S): Acinetobacter baumannii

2013-08-05 | E-GEOD-40681 | biostudies-arrayexpress

RiboSeq of BSR cells infected at MOI 3 with Theiler's murine encephalomyelitis virus, compared to mock-infected controls, harvested at 10 hpi

BSR cells were infected with the Cardiovirus B archetype, Theiler’s murine encephalomyelitis virus (TMEV), and mutants thereof, and subjected to ribosome profiling to analyse the viral translatome, frameshifting, and ribosome pausing events. Samples were harvested at 10 hpi by flash-freezing, withou...

ORGANISM(S): Mesocricetus auratus

2021-11-10 | E-MTAB-9438 | biostudies-arrayexpress

Genomic consequences of background effects on scalloped mutant expressivity in the wing of Drosophila

Genetic background effects contribute to the phenotypic consequences of mutations, and are pervasive across all domains of life that have been examined, yet little is known about how they modify genetic systems. In part this is due to the lack of tractable model systems that have been explicitly de...

ORGANISM(S): Drosophila melanogaster

2010-05-15 | E-GEOD-13779 | biostudies-arrayexpress

Metabolomics-derived insights into the manipulation of terpenoid sysnthesis in Centella asiatica cells by methyl-jasmonate

Centella asiatica is an important medicinal plant with a wide range of bioactivities associated with its secondary metabolites. Using two extraction procedures, metabolomic approaches were used to investigate changes in the metabolome of C. asiatica cells treated with exogenous MeJA. GC–MS and LC–MS...

2015-03-03 | MTBLS175 | MetaboLights

Intrathecal drug delivery in the era of nanomedicine.