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MetabolomicsMetabolite profile data of grapevine plants with brown wood streaking and grapevine leaf stripe (esca complex disease) symptoms

Leaf samples were obtained from Vitis vinifera ‘Malvasia Fina’ plants with well-characterized esca complex disease symptoms (n = 18) and from healthy uninfected plants (n = 6). Leaves from diseased plants were divided into three groups: asymptomatic (ASY), chlorotic (SY1), and scorched leaves (SY...

2021-11-21 | MTBLS353 | MetaboLights
TranscriptomicsLocalizing gene regulation by RNA-seq reveals a staggered wood decay mechanism for the brown rot fungus Postia placenta
Wood-degrading brown rot fungi are essential recyclers of plant biomass in forest ecosystems. Their efficient cellulolytic systems, which have potential biotechnological applications, apparently depend on a combination of two mechanisms: lignocellulose oxidation by reactive oxygen species (ROS) and ...
ORGANISM(S): Postia placenta 
2016-07-18 | E-GEOD-84529 | biostudies-arrayexpress
ProteomicsProteomic analysis of brown rot wood decay fungus Fomitopsis pinicola grown on wood substrate
The brown rot wood decay fungus, Fomitopsis pinicola strain FP-58527, was cultivated for five dayes in media containing ground Populus tremuloides, Pinus taeda or Picea glauca wood as sole carbon source. Extracellular proteomic component was extracted and analyzed by LC-MS/MS.
ORGANISM(S): Fomitopsis Pinicola (ncbitaxon:40483) 
MSV000084351 | MassIVE
TranscriptomicsTranscriptome analysis of the brown rot fungus Gloeophyllum trabeum during lignocellulose degradation
Brown rot fungi have great potential in biorefinery wood conversion systems, because they are the primary wood decomposers in coniferous forests and have an efficient lignocellulose degrading system. Their initial wood degradation mechanism is thought to consist of an oxidative radical-based system ...
ORGANISM(S): Gloeophyllum trabeum 
2020-08-05 | GSE155681 | GEO
TranscriptomicsRegulatory mechanisms of brown rot genes for responding to environmental carbon signals in Postia placenta
Brown rot fungi evolved the unique strategy to efficiently decay wood structures and selectively extract carbohydrates, and this involved the sophistical regulation of functional genes (Zhang et al., PNAS, 2016, 113: 10968-). However, the regulatory mechanisms of brown rot genes were not well known,...
ORGANISM(S): Rhodonia placenta 
2018-09-11 | GSE119714 | GEO
GenomicsTranscriptome analysis of the brown rot fungus Gloeophyllum trabeum during lignocellulose degradation
Transcriptome analysis of the brown rot fungus Gloeophyllum trabeum during lignocellulose degradation
PRJNA655214 | ENA
TranscriptomicsComparing gene expression timing and amplitude to delineate the unique pathways of brown and white rot wood-degrading fungi
Wood-degrading fungi play a critical role in global carbon cycling, and their varied mechanisms for deconstruction offer pathways for industrial bioconversion. In this study, we used comparative genomics to isolate upregulation patterns among fungi with brown rot (carbohydrate-selective) or white ro...
ORGANISM(S): Trametes versicolor Pleurotus ostreatus Gloeophyllum trabeum Rhodonia placenta 
2018-01-05 | GSE108189 | GEO
UnknownExtensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi.
Not available
S-EPMC4103376 | biostudies-literature
UnknownSpatial Heterogeneity of SOM Concentrations Associated with White-rot Versus Brown-rot Wood Decay.
Not available
S-EPMC5653805 | biostudies-literature
GenomicsRegulatory mechanisms of brown rot genes for responding to environmental carbon signals in Postia placenta
Regulatory mechanisms of brown rot genes for responding to environmental carbon signals in Postia placenta
PRJNA490098 | ENA
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