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ProteomicsA pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease
Addona TA, Shi X, Keshishian H, Mani DR, Burgess M, Gillette MA, Clauser KR, Shen D, Lewis GD, Farrell LA, Fifer MA, Sabatine MS, Gerszten RE, Carr SA. Nat Biotechnol. 2011, 29(7):635-43. doi: 10.1038/nbt.1899. PMCID:PMC3366591. Discovery, AIMS, and MRM datasets Discovery_Tranche_hash: b/quYtp/Q8fY...
2013-12-19 | MSV000078513 | MassIVE
Transcriptomicschickspress_small
Lack of comprehensive genome structural- and functional-annotation significantly prevents researchers from exploiting the full potential of the chicken genome model system for comparative and functional genomic studies. Comprehensive genome structural- and functional-annotation must be made easily a...
ORGANISM(S): Gallus gallus 
2015-12-16 | E-MTAB-1826 | biostudies-arrayexpress
TranscriptomicsChickspress
Lack of comprehensive genome structural- and functional-annotation significantly prevents researchers from exploiting the full potential of the chicken genome model system for comparative and functional genomic studies. Comprehensive genome structural- and functional-annotation must be made easily a...
ORGANISM(S): Gallus gallus 
2013-10-04 | E-MTAB-1778 | biostudies-arrayexpress
ProteomicsChickspress: a resource for chicken gene expression
Red Jungle Fowl (male and female) tissues were analyzed using LC-MS/MS. Tissues analyzed were: adipose, adrenal gland, breast muscle, cerebellum, cerebrum, gonad, heart, hypothalamus, kidney, liver, lung, pancreas, proventriculus, sciatic nerve, speen. Samples were analyzed using an LTQ Velos Pro ...
ORGANISM(S): Gallus Gallus (ncbitaxon:9031) 
2016-11-07 | MSV000080320 | MassIVE
TranscriptomicsRNA-Seq based transcriptional map of bovine respiratory disease pathogen 'Histophilus somni 2336'
We used RNA-Seq to experimentally annotate H. somni strain 2336 and construct a single nucleotide resolution transcriptome map. Novel expressed elements were identified, and where appropriate, computational predictions of previously described gene boundaries were corrected. Transcript profiling of a...
ORGANISM(S): Histophilus somni 
2011-09-30 | E-GEOD-29578 | biostudies-arrayexpress
TranscriptomicsTranscriptional imprinting of transmigrating neutrophils on T84 intestinal epithelial cells
Neutrophil accumulation in crypt abscesses is a pathological hallmark of ulcerative colitis. Based on recent evidence that mucosal metabolic changes influence disease outcomes, we hypothesized that transmigrating neutrophils influence the transcriptional profile of intestinal epithelia. Microarray...
ORGANISM(S): Homo sapiens 
2012-10-31 | E-GEOD-39681 | biostudies-arrayexpress
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