Burkholderia - OmicsDI

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Unknown (2863)
Genomics (2267)
Transcriptomics (241)
Proteomics (119)
Metabolomics (38)
Other (8)
Methylation profiling (3)
Models (2)

Organisms

Burkholderia cenocepacia (46)
Burkholderia pseudomallei (26)
Mus musculus (26)
Homo sapiens (22)
Burkholderia pseudomallei K96243 (17)
Burkholderia multivorans (16)
Arabidopsis thaliana (14)
Burkholderia cenocepacia H111 (12)
Burkholderia thailandensis (12)
Ralstonia solanacearum (9)
Burkholderia mallei (8)
Burkholderia cepacia (7)
Burkholderia thailandensis E264 (6)
Burkholderia glumae (4)
Solanum lycopersicum (3)
Burkholderia contaminans (3)
Pseudomonas aeruginosa (3)
Burkholderia gladioli (3)
Rhizopus microsporus (3)
Burkholderia glumae BGR1 (3)
Medicago truncatula (2)
Saccharomyces cerevisiae (2)
Vibrio campbellii (2)
bacterium (1)
Ralstonia solanacearum UW551 (1)
Pseudomonas putida F1 (1)
Ralstonia pickettii (1)
Burkholderia lata (1)
Burkholderia ambifaria (1)
Cupriavidus taiwanensis LMG 19424 (1)

Organisms

Burkholderia pseudomallei (220)
Burkholderia cenocepacia (116)
Burkholderia thailandensis E264 (108)
Burkholderia glumae (55)
Burkholderia cepacia (52)
Pseudomonas syringae pv. tomato str. DC3000 (48)
Chromobacterium violaceum (48)
Burkholderia contaminans (47)
Burkholderia gladioli (45)
Burkholderia thailandensis (43)
Burkholderia mallei (37)
Burkholderia multivorans (27)
Burkholderia pyrrocinia (23)
Mus musculus (19)
Burkholderia vietnamiensis (15)
Homo sapiens (13)
Burkholderia (12)
Burkholderia ambifaria (12)
leaf metagenome (12)
soil metagenome (11)
Burkholderia cenocepacia H111 (10)
Burkholderia plantarii (10)
Burkholderia orbicola (9)
Burkholderia pseudomallei K96243 (8)
Burkholderia stabilis (8)
Burkholderia dolosa (7)
Burkholderia arboris (7)
Burkholderia cepacia ATCC 25416 (6)
Burkholderia anthina (6)
Burkholderia gladioli pv. cocovenerans (6)

Repository

ENA (2253)
biostudies-arrayexpress (134)
geo (126)
pride (97)
GNPS (21)
MassIVE (19)
MetaboLights (17)
iProX (3)
jPOST (3)
BioModels (2)
ExpressionAtlas (1)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (6)
Cell suspension culture (2)
B cell (1)
Blood (1)
Culture supernatant (1)
Epithelial cell of lung (1)
Fungus (1)
Monocyte (1)
Permanent cell line cell (1)
Prokaryotic cell (1)
Root (1)
Root nodule (1)
Shoot (1)

Disease

Melioidosis (4)
Cystic fibrosis (2)
Non-diabetic (1)
Normal (1)
Not Available (1)
Glanders (1)

Technology Type

Mass Spectrometry (97)
Shotgun proteomics (57)
Bottom-up proteomics (28)
Mass spectrometry (8)
Mass spectrometry assay (8)
Data-dependent acquisition (6)
SWATH MS (5)
Data-independent acquisition (4)
Gel-based experiment (3)
NMR spectroscopy (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Top-down proteomics (1)

Instrument Platform

Impact II (8)
NextSeq 500 (7)
6520A Quadrupole Time-of-Flight LC/MS (5)
Q Exactive (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
Orbitrap Exploris 120 (3)
Orbitrap Exploris 480 (3)
SYNAPT G2-Si (3)
Illumina MiSeq (2)
Xevo G2 Q-Tof (2)
LCMS-9030 (2)
Synapt HDMS (2)
6545 Q-TOF LC/MS (2)
ScanArray scanning hardware (1)
Illumina Genome Analyzer (1)
GenePix 4000A [Axon Instruments] (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina HiSeq X (1)
Illumina HiSeq 1000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Impact (1)
MicrOTOF (1)
MicroTOF LC (1)
Orbitrap ID-X (1)
Xevo G2 Tof|1001784 (1)
Instrument (1)
Agilent 6530C Q-TOF LC/MS system (1)
Agilent 7890A GC system, Agilent 5975C MS detector (1)

Publication Date

2026 (36)
2022 (33)
2012 (32)
2023 (29)
2024 (28)
2011 (26)
2025 (26)
2021 (24)
2015 (23)
2017 (21)
2010 (21)
2019 (20)
2014 (20)
2013 (16)
2016 (15)
2018 (11)
2009 (11)
2020 (10)
2008 (5)
2006 (5)
2007 (2)
2005 (2)
2004 (2)

CHEBI ID

CHEBI:27897 (5)
CHEBI:28044 (4)
CHEBI:22660 (3)
CHEBI:18237 (3)
CHEBI:15428 (3)
CHEBI:22653 (3)
CHEBI:27266 (3)
CHEBI:6650 (3)
CHEBI:26986 (3)
CHEBI:28300 (3)
CHEBI:25094 (3)
CHEBI:16914 (3)
CHEBI:30769 (3)
CHEBI:80446 (2)
CHEBI:17417 (2)
CHEBI:87766 (2)
CHEBI:31832 (2)
CHEBI:17754 (2)
CHEBI:17822 (2)
CHEBI:17234 (2)
CHEBI:24898 (2)
CHEBI:16811 (2)
CHEBI:18292 (2)
CHEBI:16411 (2)
CHEBI:26271 (2)
CHEBI:18012 (2)
CHEBI:78320 (2)
CHEBI:15971 (2)
CHEBI:15741 (2)
CHEBI:15603 (2)

Metabolite Name

Lysine (5)
Phenylalanine (5)
Leucine (4)
Tyrosine (4)
Isoleucine (4)
Creatine (4)
Histidine (3)
Valine (3)
Allantoin (3)
DL-Lysine (3)
Choline (3)
Jasmonic acid (3)
Arginine (3)
Asparagine (3)
Histamine (3)
Alanine (3)
Salicylic acid (3)
Creatinine (3)
Caffeine (3)
Tryptophan (3)
Terconazole (2)
Penfluridol (2)
Penconazole (2)
Nicergoline (2)
Indomethacin (2)
Fluazifop-butyl (2)
Cyhalothrin (2)
Eremanthin (2)
Ropivacaine (2)
Imipenem (2)

First Public Date

2018 (304)
2013 (293)
2014 (262)
2016 (163)
2022 (152)
2025 (150)
2024 (148)
2017 (124)
2020 (123)
2023 (117)
2019 (114)
2026 (109)
2021 (97)
2015 (92)
2011 (3)
2012 (2)

Modelling Approach

Computational model (1)
Constraint-based model (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (21)
Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (19)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
Department of Microbiology and Immunology at the Peter Doherty Institute of infection and immunity, University of Melbourne, Melbourne, Victoria, Australia (4)
CeMM - Research Center for Molecular Medicine of the Austrian Academy of Sciences (2)
Department of Microbiology and Immunology, University of Melbourne, Victoria, Australia (2)
1Environmental Biotechnology and Genomics Laboratory, School of the Environment, Florida A&M University, Tallahassee, FL- 32307, USA (1)
AIMI - UTS (1)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Australian Institute for Microbiology and Infection (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
CINDEFI-CONICET-UNLP (1)
Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Laval, QC, Canada (1)
Department of Chemistry, University of Zurich, 8057 Zurich, Switzerland. (1)
Department of Microbiology and Immunology at the Peter Doherty Institute of infection and immunity, University of Melbourne, Melbourne, Victoria, Australia (1)
Division of Infection and Immunity, Roslin Institute, University of Edinburgh, UK (1)
Functional Proteomics Laboratory, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad 121001, INDIA. (1)
Impact Proteomics LLC, Pittsburgh, PA, USA 15206 (1)
Institute of Chemistry, Federal University of Rio de Janeiro, Brazil. (1)
Institute of Plant Biology, University of Zurich, Zurich, Switzerland (1)
Investigator Chief, Cellular Networks Proteomics Unit Laboratory of Immune System Biology National Institute of Allergy and Infectious Diseases National Institutes of Health Bldg. 4 Rm. 101 4 Memorial Dr Bethesda MD 20892-1892 (1)
LLNL (1)
Laboratory for Applied Science and Technology in Health, Carlos Chagas Institute, Fiocruz Parana, Parana, Brazil (1)
Lawrence Livermore National Laboratory (1)
Louisiana State University Mass Spectrometry Facility (1)
Louisiana State University, Department of Biological Sciences. (1)
Marshall Centre for Infectious Diseases Research and Training School of Biomedical Sciences University of Western Australia Perth, WA, Australia (1)
Marshall Centre for Infectious Diseases Research and Training, School of Biomedical Sciences, University of Western Australia, Perth, Western Australia, Australia (1)
Max Planck Institute for Dynamics of Complex Technical Systems Bioprocess Engineering Bio/Process Analytics (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

Classification

bacteria (1380)
viruses (12)
fungi (9)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (83)
RNA-seq of coding RNA (26)
Comparative genomic hybridization by array (11)
Transcription profiling by tiling array (3)
Other (2)
DNA-seq (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
Whole chromosome random sequencing (1)
Cell line - High-throughput sequencing (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (253)
2022 (232)
2020 (207)
2023 (203)
2025 (200)
2024 (197)
2019 (188)
2017 (178)
2016 (159)
2018 (156)
2014 (146)
2015 (144)
2012 (120)
2013 (98)
2011 (93)
2010 (64)
2009 (55)
2008 (41)
2006 (37)
2007 (36)
2004 (31)
2005 (28)
2026 (26)
2003 (25)
1999 (19)
2002 (18)
2001 (16)
2000 (16)
1998 (11)

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Burkholderia cenocepacia-mediated inhibition of Staphylococcus aureus growth and biofilm formation

Staphylococcus aureus asymptomatically colonizes the nasal cavity and pharynx of up to 60% of the human population and, as an opportunistic pathogen, can breach its normal habitat, resulting in life-threatening infections. S. aureus infections are of additional concern for populations with impair...

2024-11-26 | MTBLS11049 | MetaboLights

Untargeted metabolomics reveals temporal rhizosphere metabolic responses during colonization of citrus by Burkholderia strain B23

This study investigated temporal changes in the citrus rhizosphere metabolome during colonization by the beneficial bacterium Burkholderia vietnamiensis B23. Rhizosphere soil samples were collected from uninoculated plants and at 1, 3, and 9 days post inoculation (dpi) with B23, representing the ini...

2026-08-25 | MTBLS15457 | MetaboLights

Expression data from Burkholderia multivorans cystic fibrosis clinical isolates

Burkholderia cepacia complex (Bcc) comprises opportunistic bacteria infecting hosts such as cystic fibrosis (CF) patients. Bcc long-term infection of CF patient airways has been associated with emergence of phenotypic variation. Here we studied two Burkholderia multivorans clonal isolates (D2095 and...

ORGANISM(S): Burkholderia multivorans

2011-08-21 | E-GEOD-28306 | biostudies-arrayexpress

Burkholderia cepacia complex and cystic fibrosis (CF) patients

This SuperSeries is composed of the following subset Series: GSE28306: Expression data from Burkholderia multivorans cystic fibrosis clinical isolates GSE30402: Hybridization of Burkholderia multivorans D2095 and D2214 genomic DNA Refer to individual Series

ORGANISM(S): Burkholderia multivorans

2011-08-21 | E-GEOD-30568 | biostudies-arrayexpress

Interbacterial signaling via Burkholderia contact-dependent growth inhibition proteins

In prokaryotes and eukaryotes, cell-cell communication and recognition of self are critical to coordinate multicellular functions. While kin and kind discrimination are increasingly appreciated to shape naturally occurring microbe populations, the underlying mechanisms that govern these interbacteri...

ORGANISM(S): Burkholderia thailandensis

2016-08-09 | E-GEOD-83143 | biostudies-arrayexpress

Transcription profiling of Burkholderia pseudomallei under salt stress and the effect on a type III secretion system

Effect of NaCl of gene expression in Burkholderia pseudomallei at two time points

ORGANISM(S): Burkholderia pseudomallei

2010-06-03 | E-MEXP-2302 | biostudies-arrayexpress

Identification of potential therapeutic targets for Burkholderia cenocepacia by comparative transcriptomics

[1] Transcription profiling of one Burkholderia cenocepacia clinical isolate, J2315, versus a soil isolate, HI2424, in conditions mimicking CF sputum [2] Transcription profiling of Burkholderia cenocepacia isolates J2315 and HI2424 in media mimicking CF sputum or the soil environment [1] J2315 vs. H...

ORGANISM(S): Burkholderia cenocepacia

2010-05-19 | E-GEOD-15817 | biostudies-arrayexpress

Transcription profiling of intramacrophage Burkholderia cenocepacia K56-2

Effect of internalization by macrophages on bacterial gene transcription in Burkholderia cenocepacia

ORGANISM(S): Burkholderia cenocepacia

2011-12-07 | E-MEXP-3408 | biostudies-arrayexpress

Hybridization of Burkholderia multivorans D2095 and D2214 genomic DNA

ORGANISM(S): Burkholderia multivorans

2011-08-21 | E-GEOD-30402 | biostudies-arrayexpress

Transcription profiling by array of Burkholderia cenocepacia J2315 from the beginning of the stationary phase compared to mid-log phase

Burkholderia cenocepacia J2315 was grown in LB broth to the beginning of stationary phase. The expression profile was compared to cultures harvested in mid-log phase.

ORGANISM(S): Burkholderia cenocepacia

2012-01-01 | E-MEXP-2754 | biostudies-arrayexpress

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5541 Results

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