Burkholderia cenocepacia

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Unknown (347)
Genomics (208)
Transcriptomics (69)
Proteomics (64)
Metabolomics (9)
Other (3)
Models (2)

Organisms

Burkholderia cenocepacia (61)
Burkholderia cenocepacia K56-2Valvano (30)
Burkholderia cenocepacia H111 (17)
Burkholderia cenocepacia J2315 (13)
Burkholderia multivorans ATCC 17616 (9)
Burkholderia cepacia (6)
Homo sapiens (6)
Burkholderia multivorans (6)
Bacteria (5)
Burkholderia ambifaria (2)
Mus musculus (2)
Campylobacter fetus subsp. fetus (2)
bacterium (1)
Burkholderia lata (1)
Burkholderia ambifaria AMMD (1)
Burkholderia cenocepacia HI2424 (1)
Burkholderia orbicola (1)
Burkholderia plantarii (1)
Burkholderia seminalis (1)
Burkholderia vietnamiensis G4 (1)
Paraburkholderia xenovorans LB400 (1)
Pseudomonas aeruginosa PAO1 (1)
Acinetobacter baumannii (1)
Burkholderia dolosa AU0158 (1)
Burkholderia pseudomallei K96243 (1)
Burkholderia ubonensis MSMB22 (1)
Campylobacter fetus subsp. fetus 82-40 (1)
Candida albicans (1)
Drosophila melanogaster (1)
Pseudomonas aeruginosa PABL056 (1)

Organisms

Burkholderia cenocepacia (116)
Burkholderia cenocepacia H111 (10)
Burkholderia cenocepacia HI2424 (3)
Burkholderia orbicola (3)
Burkholderia cenocepacia J2315 (2)
Pseudomonas aeruginosa PAO1 (2)
Burkholderia cenocepacia K56-2Valvano (1)
Burkholderia cenocepacia K56-2Sokol (1)
Burkholderia cenocepacia BC7 (1)
Burkholderia cenocepacia KC-01 (1)
Burkholderia cenocepacia PC184 (1)
Burkholderia plantarii (1)
Burkholderia cenocepacia D2AES (1)
Burkholderia cenocepacia S2AES (1)
Burkholderia cenocepacia PT15 (1)
Microbacterium ginsengisoli (1)
Burkholderia contaminans (1)
Homo sapiens (1)
Mus musculus (1)

Repository

ENA (202)
pride (63)
biostudies-arrayexpress (46)
geo (30)
GNPS (8)
BioModels (2)
MassIVE (2)
GPMDB (1)
MetaboLights (1)

Tissue

Cell culture (6)
Blood (1)
Monocyte (1)
Permanent cell line cell (1)

Disease

Cystic fibrosis (2)
Not Available (1)

Technology Type

Mass Spectrometry (63)
Shotgun proteomics (34)
Bottom-up proteomics (18)
SWATH MS (5)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Mass spectrometry assay (1)
Gel-based experiment (1)

Instrument Platform

NextSeq 500 (6)
6520A Quadrupole Time-of-Flight LC/MS (5)
Impact II (4)
Illumina Genome Analyzer (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina HiSeq X (1)
Illumina HiSeq 1000 (1)
Illumina NovaSeq 6000 (1)
Impact (1)
Instrument (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2024 (15)
2012 (14)
2015 (13)
2026 (13)
2021 (12)
2025 (12)
2011 (11)
2023 (11)
2022 (8)
2017 (8)
2010 (7)
2019 (6)
2014 (6)
2009 (5)
2020 (4)
2018 (3)
2013 (3)
2008 (1)

Metabolite Name

(+)-Allopumiliotoxin 267A (1)
(+)-Eudesmin (1)
(-)-Lupinine (1)
(.+/-.)-Laudanosine (1)
(1R,2S)-1-(7,8-Dihydro-6-pteridinyl)-1,2-propanediol (1)
(1S,5R)-5-Isopropenyl-2-methyl-2-cyclohexen-1-yl beta-D-glucopyranoside (1)
(2E)-hexadecenoylcarnitine (1)
(2E,2'E)-3,3'-[2,4-Bis(1,3-benzodioxol-5-yl)-1,3-cyclobutanediyl]bis[1-(1-piperidinyl)-2-propen-1-one] (1)
(2R,5R,6R)-3-[(1E,3E)-hepta-1,3-dien-1-yl]-5,6-dihydroxy-2-(hydroxymethyl)cyclohexan-1-one (1)
(2S)-3-Hydroxy-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)butanoic acid (non-preferred name) (1)
(2S)-3-Phenyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-4-Methyl-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)pentanoic acid (non-preferred name) (1)
(2S)-5-Carbamimidamido-2-(2-oxo-1-azetidinyl)pentanoic acid (1)
(4-Ethoxyphenyl)urea (1)
(4R)-4-{[(4R)-4-Hydroxy-1-methyl-L-prolyl]oxy}-1-methyl-L-proline (1)
(4S,5S,8S,10R)-4,5,8-trihydroxy-10-methyl-3,4,5,8,9,10-hexahydro-2H-oxecin-2-one (1)
(4S,5S,8S,10R)-4,5,8-trihydroxy-10-methyl-3,4,5,8,9,10-hexahydro-2H-oxecin-2-one*;*Hopantenic acid (1)
(5Z)-3-aminonon-5-enoic acid (1)
(5alpha,7alpha)-17-(Cyclopropylmethyl)-7-(2-hydroxy-3,3-dimethyl-2-butanyl)-6-methoxy-18,19-dihydro-4,5-epoxy-6,14-ethenomorphinan-3-yl beta-D-glucopyranosiduronic acid (1)
(6aR,11aR)-10-(3-Hydroxy-3-methylbutyl)-6a,11a-dihydro-6H-[1]benzofuro[3,2-c]chromene-3,9-diol (1)
(±)15-HETE (1)
.alpha.-Aminoadipic acid (1)
.alpha.-Glucoheptitol (1)
1,3,7-Trimethyluric acid (1)
1,3a,8-Trimethyl-1,2,3,3a,8,8a-hexahydropyrrolo[2,3-b]indol-5-yl methylcarbamate (1)
1,6-Dimethoxypyrene (1)
1-Methyl-2,3,4,9-tetrahydro-1H-beta-carboline-1,3-dicarboxylic acid (1)
1-Methyl-L-histidine*,*3-Methyl-L-histidine (1)
1-Nitrosopiperidine (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

First Public Date

2016 (33)
2018 (24)
2023 (18)
2013 (18)
2021 (15)
2026 (14)
2024 (14)
2017 (14)
2022 (9)
2020 (9)
2015 (9)
2014 (9)
2025 (8)
2019 (8)

Classification

bacteria (146)

Modelling Approach

Computational model (1)
Constraint-based model (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA (11)
DNA-seq (2)
RNA-seq of total RNA (1)

Release Date

2012 (28)
2021 (26)
2017 (26)
2011 (25)
2024 (23)
2018 (23)
2015 (23)
2025 (23)
2023 (21)
2020 (21)
2022 (20)
2016 (20)
2019 (19)
2014 (19)
2013 (17)
2010 (14)
2009 (13)
2008 (8)
2005 (8)
2004 (6)
2006 (5)
2007 (3)
2026 (1)
2003 (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (20)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (9)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
Department of Microbiology and Immunology at the Peter Doherty Institute of infection and immunity, University of Melbourne, Melbourne, Victoria, Australia (4)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
CeMM - Research Center for Molecular Medicine of the Austrian Academy of Sciences (1)
Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Laval, QC, Canada (1)
Department of Chemistry, University of Zurich, 8057 Zurich, Switzerland. (1)
Department of Microbiology and Immunology at the Peter Doherty Institute of infection and immunity, University of Melbourne, Melbourne, Victoria, Australia (1)
Department of Microbiology and Immunology, University of Melbourne, Victoria, Australia (1)
Institute of Plant Biology, University of Zurich, Zurich, Switzerland (1)
Investigator Chief, Cellular Networks Proteomics Unit Laboratory of Immune System Biology National Institute of Allergy and Infectious Diseases National Institutes of Health Bldg. 4 Rm. 101 4 Memorial Dr Bethesda MD 20892-1892 (1)
Laboratory for Applied Science and Technology in Health, Carlos Chagas Institute, Fiocruz Parana, Parana, Brazil (1)
Max Planck Institute for Dynamics of Complex Technical Systems Bioprocess Engineering Bio/Process Analytics (1)
Paulista School of Medicine, Federal University of Sao Paulo (1)
School of Biomedical and Biomolecular Science, University College Dublin (1)
Siobhán McClean, PhD, PDip Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
University of Copenhagen Faculty of Health Sciences Centre for Glycomics Department of Cellular and Molecular Medicine Copenhagen Denmark (1)
 Professor of Microbiology and Infectious Diseases   Health & Safety Coordinator The Wellcome-Wolfson Institute for Experimental Medicine Queen's University of Belfast;  97 Lisburn Rd. Belfast, UK BT9 7BL  Phone: +44 (0) 28 9097 6025; http://publish.uwo.ca/~mvalvano/ (1)

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Burkholderia cenocepacia-mediated inhibition of Staphylococcus aureus growth and biofilm formation

Staphylococcus aureus asymptomatically colonizes the nasal cavity and pharynx of up to 60% of the human population and, as an opportunistic pathogen, can breach its normal habitat, resulting in life-threatening infections. S. aureus infections are of additional concern for populations with impair...

2024-11-26 | MTBLS11049 | MetaboLights

Deciphering the role of RND efflux transporters in Burkholderia cenocepacia D4

To compare the expression profile of B. cenocepacia mutants impaired in RND efflux pump encoding genes