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Unknown (7865)
Transcriptomics (226)
Genomics (139)
Proteomics (58)
Metabolomics (11)
Models (4)
Genomic (4)
Clinical (1)
Methylation profiling (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (47)
Mus musculus (44)
Schizosaccharomyces pombe (37)
Rattus norvegicus (32)
Rattus rattus (24)
Danio rerio (7)
Coprinopsis cinerea (6)
Ovis aries (4)
Pseudomonas aeruginosa (4)
cellular organisms (3)
Xenopus laevis (3)
Bos taurus (3)
Arabidopsis thaliana (3)
Cryptopygus antarcticus (2)
Amphiura filiformis (2)
Citrus sinensis (2)
Solanum tuberosum (2)
Saccharomyces cerevisiae (2)
Pseudomonas aeruginosa PAO1 (2)
Sus scrofa (2)
Hymenochirus boettgeri (1)
Megaphorura arctica (1)
Ruegeria pomeroyi DSS-3 (1)
Plasmodium yoelii (1)
Harpagifer antarcticus (1)
Solenopsis invicta (1)
Plasmodium falciparum (1)
Drosophila melanogaster (1)
Sus scrofa domesticus (1)
Oryctolagus cuniculus (1)

Organisms

Homo sapiens (27)
Mus musculus (20)
Pseudomonas aeruginosa (6)
Danio rerio (5)
Acinetobacter baumannii (4)
Rattus norvegicus (2)
Klebsiella pneumoniae subsp. pneumoniae KpQ15 (1)
Klebsiella pneumoniae subsp. pneumoniae KpQ24 (1)
Klebsiella pneumoniae subsp. pneumoniae KpQ3 (1)
Aloe vera (1)
Penstemon (1)
Pseudomonas aeruginosa UCBPP-PA14 (1)
hospital metagenome (1)
Providencia stuartii (1)
Oryctolagus cuniculus (1)
Enterobacter hormaechei (1)
mouse metagenome (1)
Equus caballus (1)
Pseudomonas aeruginosa PAO1 (1)
Citrus sinensis (1)
Sus scrofa (1)
Streptococcus pyogenes (1)
Sus scrofa domesticus (1)
Bacteria (1)
Plasmodium yoelii (1)
Klebsiella pneumoniae (1)
mouse gut metagenome (1)

Repository

biostudies-arrayexpress (203)
ENA (130)
pride (50)
geo (34)
MetaboLights (9)
MassIVE (5)
BioModels (4)
dbGaP (4)
GNPS (2)
ExpressionAtlas (1)
GPMDB (1)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (14)
Epithelial cell (8)
Wound fluid (3)
Skin (3)
Pancreas (2)
Brain (2)
Blood plasma (2)
Blood (2)
Mammary gland tumor cell (1)
Sertoli cell (1)
Mammary gland (1)
Cornea (1)
Retina (1)
Keratinocyte (1)
Blood platelet (1)
Cerebrospinal fluid (1)
Muscle (1)
Blood serum (1)
Bronchoalveolar lavage (1)
Endothelial cell of umbilical vein (1)
Whole body (1)
Fibroblast (1)
Primary cell (1)
Hepatocyte (1)
Permanent cell line cell (1)
B cell (1)
Saliva (1)
Liver (1)
Neutrophil (1)
Colon (1)

Disease

Pancreatic ductal carcinoma (5)
Wounds and Injuries (5)
Burn injury (2)
Cervix carcinoma (2)
Pancreatic cancer (2)
Normal transgenic (transgenic betaARKct) (1)
Burn/trauma (1)
Cystitis (1)
Not Available (1)
Eye disease (1)
Severe congenital neutropenia (1)
Pneumonia (1)
Zika fever (1)
Brain cancer (1)
Breast cancer (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (50)
Shotgun proteomics (28)
Mass spectrometry (8)
SWATH MS (7)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (3)
Top-down proteomics (3)
Mass spectrometry assay (1)
Immunopeptidomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (5)
Illumina NovaSeq 6000 (4)
Q Exactive (3)
AB SOLiD 4 System (2)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Kodak EDAS 290 (1)
Affymetrix GeneChip Scanner 3000 7G (1)
MinION (1)
Illumina HiSeq 4000 (1)
Instrument (1)
Orbitrap Ascend (1)
LTQ Orbitrap Velos (1)
QTRAP 6500+ (1)
LTQ Orbitrap Elite (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - alternating (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2005 (45)
2016 (23)
2022 (20)
2024 (19)
2010 (18)
2004 (18)
2021 (16)
2013 (15)
2014 (14)
2007 (13)
2015 (12)
2008 (12)
2025 (11)
2011 (11)
2012 (10)
2023 (9)
2026 (9)
2020 (8)
2019 (8)
2002 (6)
2009 (5)
2006 (5)
2018 (2)
2017 (1)

CHEBI ID

CHEBI:49033 (3)
CHEBI:30769 (3)
CHEBI:37024 (3)
CHEBI:18211 (3)
CHEBI:18186 (3)
CHEBI:133089 (2)
CHEBI:28623 (2)
CHEBI:17242 (2)
CHEBI:133677 (2)
CHEBI:89205 (2)
CHEBI:133186 (2)
CHEBI:90344 (2)
CHEBI:53014 (2)
CHEBI:68505 (2)
CHEBI:73028 (2)
CHEBI:68434 (2)
CHEBI:1606 (2)
CHEBI:27410 (2)
CHEBI:45826 (2)
CHEBI:74066 (2)
CHEBI:23774 (2)
CHEBI:39540 (2)
CHEBI:82914 (2)
CHEBI:32389 (2)
CHEBI:15724 (2)
CHEBI:133469 (2)
CHEBI:132948 (2)
CHEBI:87986 (2)
CHEBI:46215 (2)
CHEBI:44673 (2)

Metabolite Name

Carnitine C20:2 (2)
Carnitine C18:2-OH (2)
Carnitine C13:0 (2)
Carnitine C17:0 (2)
Carnitine C16:2 (2)
Carnitine C8:1 (2)
LPE(18:2/0:0) (2)
LPE(0:0/16:0) (2)
Carnitine C18:2 (2)
Carnitine C16:1 (2)
Carnitine C16:0 (2)
Carnitine C16-OH (2)
Carnitine C14:1 (2)
Carnitine C14-OH (2)
Carnitine C12:0 (2)
Carnitine C12-OH (2)
LPE(18:0/0:0) (2)
Carnitine C3:0 (2)
Carnitine C6:0 (2)
Prostaglandin A2 (2)
3-hydroxyadipate* (2)
3-hydroxypyridine sulfate (2)
Guaiacol sulfate (2)
O-cresol sulfate (2)
Campesterol (2)
Pyroglutamine* (2)
Palmitoylcholine (2)
P-cresol glucuronide* (2)
Methionine sulfone (2)
2-aminophenol sulfate (2)

First Public Date

2024 (19)
2025 (15)
2020 (14)
2022 (13)
2014 (13)
2026 (12)
2023 (11)
2019 (8)
2021 (7)
2018 (5)
2016 (5)
2017 (3)
2013 (3)
2015 (2)

Modelling Approach

Ordinary differential equation model (4)

Study status

Not provided (1)

Lab affiliation

Leader of the Molecular and Systems Oncology Team in the Division of Molecular Pathology at The Institute of Cancer Research, London, UK (3)
University of Manchester (3)
Burns and Trauma Research,School of Biomedical Sciences, Queensland University of Technology (2)
Institute of Molecular and Cell Biology, University of Tartu, Riia 23b, 51010, Tartu, Estonia (2)
Lab Head of Systems Oncology lab at CRUK Manchester Institute (1)
Lab head of System Oncology lab at CRUK Manchester Institute (1)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
Lab head of the Systems Oncology group at CRUK MI. (1)
Lab Head Systems Oncology group at CRUK Manchester Institute (1)
Lab head Systems Oncology group at CRUK Manchester Institute (1)
Yale University, Department of MBB, Yale MS & Proteomics Resource (1)
Institute of Rocket Force Medicine, State Key Laboratory of Trauma, Burns and Combined Injury, Third Military Medical University (Army Medical University) (1)
Division of Molecular Pathology Molecular and Systems Oncology Team The Institute of Cancer Research 237 Fulham Road, SW3 6JB London United Kingdom (1)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Queensland University of Technology (QUT), School of Biomedical Sciences, Faculty of Health, Centre for Children’s Health Research, South Brisbane, Queensland, Australia (1)
Department of Burn Surgery, the First Affiliated Hospital of Naval Medical University, Shanghai, People’s Republic of China; Research Unit of key techniques for treatment of burns and combined burns and trauma injury, Chinese Academy of Medical Sciences, Shanghai, China. (1)
Associate Professor of Chemistry and Chemical Biology, DEPARTMENT of CHEMISTRY & CHEMICAL BIOLOGY, HARVARD UNIVERSITY (1)
Biogen Inc. (1)
ERIBA - UMCG (lab head) (1)
Director of Carnegie MS facility (1)
Department of Tropical Medicine, Medical Microbiology, and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic (1)
Naval Research Laboratory, Washington, DC, USA (1)
Department of Ophthalmology, Shanghai Tenth People’s Hospital, School of Medicine, Tongji University, Shanghai 200072, China. (1)
National Institutes of Health (NIH) National Center for Advancing Translational Sciences (NCATS) Division of Pre-clinical Innovation (DPI) (1)
State Key Laboratory of Trauma, Burns and Combined Injury, Shock and Transfusion Department of Research Institute of Surgery, Daping Hospital, Army Medical University, People’s Republic of China, Chongqing 400042, P.R. China； (1)
New York University (1)
Centre for Children’s Burn and Trauma Research, Centre for Children’s Health Research, Queensland University of Technology, South Brisbane, Queensland, Australia (1)
Northwestern University (1)
National Institutes of Health (NIH) National Center for Advancing Translational Sciences (NCATS) (1)