Burrows R R - OmicsDI

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Unknown (409)
Transcriptomics (57)
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Organisms

Mus musculus (6)
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Repository

biostudies-arrayexpress (89)
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geo (10)
pride (3)
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Tissue

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Technology Type

Bottom-up proteomics (3)
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Instrument Platform

Illumina NovaSeq 6000 (4)
NextSeq 500 (4)
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DNBSEQ-T7 (1)
Liquid Chromatography MS - negative - hilic (1)
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Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2011 (27)
2014 (12)
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2026 (6)
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2022 (3)
2010 (3)
2023 (3)
2025 (2)
2020 (1)

CHEBI ID

CHEBI:17895 (2)
CHEBI:30769 (2)
CHEBI:7676 (2)
CHEBI:38068 (1)
CHEBI:10136 (1)
CHEBI:10724 (1)
CHEBI:108580 (1)
CHEBI:116314 (1)
CHEBI:125601 (1)
CHEBI:131608 (1)
CHEBI:132244 (1)
CHEBI:132983 (1)
CHEBI:133086 (1)
CHEBI:133145 (1)
CHEBI:133176 (1)
CHEBI:133246 (1)
CHEBI:133460 (1)
CHEBI:133657 (1)
CHEBI:133672 (1)
CHEBI:134231 (1)
CHEBI:136372 (1)
CHEBI:137332 (1)
CHEBI:138367 (1)
CHEBI:138772 (1)
CHEBI:139134 (1)
CHEBI:139272 (1)
CHEBI:139382 (1)
CHEBI:140934 (1)
CHEBI:141950 (1)
CHEBI:143726 (1)

Metabolite Name

(+)-7-epi-Syringaresinol 4'-glucoside (1)
(+/-)-1-Acetoxy-1-ethoxyethane (1)
(-)-11-Hydroxy-9,15,16-trioxooctadecanoic acid (1)
(-)-Maackiain (1)
(1R,2R,4S)-p-Menthane-1,2,8-triol (1)
(1S,2S,4R,8R)-p-Menthane-1,2,9-triol (1)
(2'E,4'Z,7'Z,8E)-Colnelenic acid (1)
(2'E,4'Z,8E)-Colneleic acid (1)
(2E)-Decenoyl-ACP (1)
(2E,6Z)-2,6-Nonadien-1-Yl acetate (1)
(3beta,5alpha,6beta,22E,24R)-23-Methylergosta-7,22-diene-3,5,6-triol (1)
(4E)-1,7-bis(4-hydroxyphenyl)hept-4-en-3-one (1)
(8E,15E)-1,8,15-Heptadecatriene-11,13-diyne (1)
(9R,10S,12Z)-9,10-Dihydroxy-8-oxo-12-octadecenoic acid (1)
(9S,10E,12Z,15Z)-9-Hydroxy-10,12,15-octadecatrienoic acid (1)
(?¡À)-Sulfobutanedioic acid (1)
(Cyclohexylmethyl)pyrazine (1)
(E)-10-Oxo-8-decenoic acid (1)
(R)-Roemerine (1)
(Z)-3-(2,4,5-Trimethoxyphenyl)-2-propenal (1)
(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform A (protein) (1)
1,2-Cyclohexanedione (1)
1,25-Dihydroxyvitamin D3-26,23-lactone (1)
1,3-Diisopropylbenzene (1)
1-(1-Pyrrolidinyl)-2-propanone (1)
1-(2,3-Dihydro-6,7-dimethyl-1H-pyrrolizin-5-yl)-2-hydroxy-1-propanone (1)
1-(2,4-dihydroxy-6-methoxyphenyl)-3-phenylprop-2-en-1-one (1)
1-(3-Aminopropyl)-4-aminobutanal (1)
1-(3-Methyl-2-butenoyl)-6-apiosylglucose (1)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (1)

IsPrivate

False (1)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

First Public Date

2023 (3)
2022 (3)
2016 (3)
2018 (2)
2024 (1)
2021 (1)
2015 (1)
2014 (1)

Modelling Approach

Computational model (1)

Study type

ChIP-seq (35)
RNA-seq of coding RNA (28)
Transcription profiling by array (12)
DNA-seq (4)
RNA-seq of non coding RNA (3)
Human - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
ATAC-seq (1)
Hi-C (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (59)
2021 (43)
2011 (41)
2024 (38)
2023 (37)
2025 (32)
2020 (32)
2016 (25)
2019 (25)
2017 (25)
2018 (24)
2014 (24)
2015 (23)
2012 (22)
2013 (21)
2026 (11)
2010 (10)
2008 (2)
2003 (2)
2009 (1)
1999 (1)

Lab affiliation

Professor Emeritus Department of Chemistry The University of Texas at San Antonio Effective July 1, 2026: Johnson Foundation Professor of Chemical Enzymology Department of Biochemistry and Biophysics, Perelman School of Medicine Department of Chemistry, School of Arts and Sciences University of Pennsylvania, Philadelphia, PA 19104 (2)
Department of Physiology, University of Kentucky, USA (1)

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Genome-wide profiling of gene expression under electro-acupuncture pretreatment on myocardial I/R injury in rats

Purpose:Acupuncture exerts cardioprotective effect on myocardial I/R injury. In order to elucidate the potential mechanisms, RNA-seq by next generation sequencing was used to identify the rat genome-wide alterations by EA at Neiguan acupoint pretreatment in this study Methods: Adult male Sprague Daw...

ORGANISM(S): Rattus norvegicus

2016-03-20 | GSE61840 | GEO

Finding Maximal Exact Matches Using the r-Index.

Not available

S-EPMC8902461 | biostudies-literature

RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of human early hematopoietic differentiation after LGR4 depletion and R-spondin2 treatment

Purpose: The goals of this study are to identify differential genes and signaling pathways after LGR4 depletion and R-spondin2 treatment through comparing thel transcriptome profilings in hESC samples collected from day2 of co-cutlure hematopoietic differentiation. Methods: mRNA profiles of hESC sam...

ORGANISM(S): Homo sapiens

2018-08-16 | GSE118596 | GEO

Early Cretaceous lepidosaur (sphenodontian?) burrows.

Not available

S-EPMC10290101 | biostudies-literature

RNA Sequencing Facilitates Quantitative Analysis of Transcriptomes of human early hematopoietic differentiation after LGR4 depletion and R-spondin2 treatment

PRJNA486173 | ENA

Fast and accurate short read alignment with Burrows-Wheeler transform.

Not available

S-EPMC2705234 | biostudies-literature

First Report of Rickettsia Identical to R. slovaca in Colony-Originated D. variabilis in the United States: Detection, Laboratory Animal Model, and Vector Competence of Ticks.

Not available