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Unknown
(7254)
Transcriptomics
(1932)
Genomics
(955)
Metabolomics
(400)
Proteomics
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Other
(10)
Models
(4)
Methylation profiling
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Clinical
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Genomic
(1)
Organisms
Homo sapiens
(888)
Mus musculus
(583)
Drosophila melanogaster
(174)
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Arabidopsis thaliana
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Saccharomyces cerevisiae
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mixed sample
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(3)
Organisms
Homo sapiens
(172)
Mus musculus
(106)
Drosophila melanogaster
(16)
Rattus norvegicus
(12)
lake water metagenome
(11)
sediment metagenome
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Arabidopsis thaliana
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soil metagenome
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Escherichia coli
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Populus deltoides
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freshwater sediment metagenome
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peat metagenome
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rhizosphere metagenome
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wastewater metagenome
(4)
Aspergillus polyporicola
(3)
Salicornia virginica
(3)
Tetrahymena thermophila
(3)
Venatorbacter sp. C2-1
(3)
Macaca mulatta
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Bos taurus
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Oryza sativa
(3)
Zea mays
(3)
Enterococcus faecalis
(2)
Klebsiella pneumoniae
(2)
Mycobacterium tuberculosis
(2)
Rhizophagus irregularis
(2)
Arthrobacter sp. C2
(2)
Mycolicibacterium smegmatis MC2 155
(2)
Fermentozyma sake
(2)
Repository
biostudies-arrayexpress
(1911)
ENA
(763)
MetaboLights
(289)
geo
(186)
pride
(149)
MetabolomicsWorkbench
(109)
MassIVE
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iProX
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EGA
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jPOST
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GPMDB
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NODE
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BioModels
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Cell Collective
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dbGaP
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EVA
(1)
FAIRDOMHub
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PAXDB
(1)
PMR
(1)
Tissue
Blood
(47)
Cell culture
(29)
Cultured cells
(13)
Feces
(13)
Epithelial cell
(13)
Permanent cell line cell
(9)
Heart
(4)
Muscle
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Liver
(4)
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(2)
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T-cells
(2)
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(2)
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(2)
Culture media
(1)
Hypothalamus
(1)
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(1)
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(1)
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(1)
Water
(1)
Cells
(1)
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(1)
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(1)
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(1)
Cecum
(1)
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(1)
Spleen
(1)
Disease
Normal
(5)
Chronic myelogenous leukemia
(2)
Prostate cancer
(2)
Head and neck squamous cell carcinoma
(2)
Lymphoma
(2)
Fibrosarcoma
(1)
Metabolic syndrome
(1)
CVB3 infected
(1)
Hepatomegaly
(1)
Perilobar nephrogenic rest
(1)
Colorectal cancer recurrence-free
(1)
No injury
(1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus
(1)
Systemic juvenile idiopathic arthritis
(1)
Xenografts with H1299 cell line
(1)
Infected
(1)
Mesothelioma
(1)
Schistosoma japonicum infection
(1)
Infected
(1)
Acute monoblastic leukaemia
(1)
Rheumatoid arthritis
(1)
Acute myelomonocytic leukaemia
(1)
IBDV infected
(1)
Resistant
(1)
Temporal lobe epilepsy
(1)
Melanoma
(1)
Intracranial aneurysm and subarachnoid haemorrhage
(1)
Prostate carcinoma
(1)
Adenocarcinoma
(1)
Ovarian cancer
(1)
Technology Type
Mass Spectrometry
(258)
Mass spectrometry assay
(145)
Mass spectrometry
(141)
ESI
(105)
Shotgun proteomics
(71)
Bottom-up proteomics
(27)
Data-dependent acquisition
(17)
Affinity purification coupled with mass spectrometry proteomics
(16)
Gel-based experiment
(15)
Data-independent acquisition
(9)
SWATH MS
(6)
Top-down proteomics
(6)
Chemical cross-linking coupled with mass spectrometry proteomics
(4)
SRM/MRM
(4)
NMR spectroscopy
(3)
Unspecified
(2)
EI
(2)
DiaPASEF
(2)
HDMSE
(2)
Affymetrix OncoScan FFPE Express
(1)
ILLUMINA, Illumina MiSeq
(1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II, Affymetrix U219
(1)
Illumina HiSeq 2000
(1)
All-ion fragmentation
(1)
MSE
(1)
Mass spectrometry imaging
(1)
Metaproteomics
(1)
Instrument Platform
Illumina NovaSeq 6000
(146)
NextSeq 500
(42)
Illumina NovaSeq X
(39)
Illumina HiSeq 2500
(38)
Illumina HiSeq 4000
(29)
NextSeq 2000
(28)
Illumina HiSeq 2000
(28)
NextSeq 550
(21)
NA
(9)
N/A
(9)
Illumina MiSeq
(8)
Illumina Genome Analyzer IIx
(7)
ScanArray Express HT
(5)
DNBSEQ-G400
(5)
Illumina HiSeq 1500
(5)
Illumina HiSeq 3000
(5)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle,
(4)
Element AVITI
(4)
Illumina Genome Analyzer II
(4)
10X Genomics reagent kit
(3)
ArrayWoRx Biochip Reader [Applied Precision]
(3)
GenePix 4000A [Axon Instruments]
(3)
10X Chromium Nuclei Isolation Kit
(2)
Desktop
(2)
PromethION
(2)
10x Genomics
(2)
418 [Affymetrix]
(2)
NextSeq 1000
(2)
N/a
(2)
Illumina HiSeq X
(2)
Publication Date
2026
(305)
2025
(298)
2013
(213)
2014
(209)
2012
(179)
2015
(178)
2010
(167)
2011
(152)
2016
(135)
2008
(113)
2024
(94)
2021
(88)
2009
(87)
2023
(80)
2022
(72)
2020
(61)
2007
(52)
2019
(47)
2017
(37)
2018
(34)
2006
(28)
2005
(18)
2002
(10)
2004
(5)
2003
(3)
2001
(2)
2027
(1)
UNIPROT ID/AC
5811.TGME49_004050
(1)
5811.TGME49_005250
(1)
5811.TGME49_027920
(1)
5811.TGME49_044150
(1)
5811.TGME49_054560
(1)
5811.TGME49_094800
(1)
5811.TGME49_102050
(1)
5811.TGME49_119870
(1)
5811.TGME49_119920
(1)
A0A0F7UMP6_TOXGV
(1)
A0A0F7UN03_TOXGV
(1)
A0A0F7UNS9_TOXGV
(1)
A0A0F7UNU4_TOXGV
(1)
A0A0F7URF8_TOXGV
(1)
A0A0F7US18_TOXGV
(1)
A0A0F7USK4_TOXGV
(1)
A0A0F7USU7_TOXGV
(1)
A0A0F7UTC9_TOXGV
(1)
A0A0F7UTQ6_TOXGV
(1)
A0A0F7UTS9_TOXGV
(1)
A0A0F7UU04_TOXGV
(1)
A0A0F7UU07_TOXGV
(1)
A0A0F7UUM4_TOXGV
(1)
A0A0F7UVN4_TOXGV
(1)
A0A0F7UWM4_TOXGV
(1)
A0A0F7UXU1_TOXGV
(1)
A0A0F7UXX2_TOXGV
(1)
A0A0F7UY31_TOXGV
(1)
A0A0F7UYG5_TOXGV
(1)
A0A0F7UZH2_TOXGV
(1)
CHEBI ID
CHEBI:15741
(26)
CHEBI:30769
(26)
CHEBI:15891
(25)
CHEBI:15428
(24)
CHEBI:30915
(23)
CHEBI:15756
(23)
CHEBI:18012
(22)
CHEBI:16737
(22)
CHEBI:16335
(21)
CHEBI:16704
(21)
CHEBI:16449
(20)
CHEBI:28044
(20)
CHEBI:6650
(20)
CHEBI:18257
(20)
CHEBI:28842
(20)
CHEBI:17295
(20)
CHEBI:18237
(19)
CHEBI:17154
(18)
CHEBI:17822
(18)
CHEBI:25017
(18)
CHEBI:32816
(18)
CHEBI:17568
(18)
CHEBI:16015
(18)
CHEBI:27897
(18)
CHEBI:17895
(18)
CHEBI:28300
(17)
CHEBI:7916
(17)
CHEBI:15971
(17)
CHEBI:16196
(17)
CHEBI:29108
(1)
Metabolite Name
Adenosine
(67)
Creatine
(67)
Hypoxanthine
(65)
Creatinine
(60)
Taurine
(59)
Uridine
(57)
Uracil
(55)
Xanthine
(52)
Citrulline
(51)
Adenine
(51)
Guanosine
(50)
Inosine
(50)
Cytidine
(49)
Xanthosine
(48)
Betaine
(47)
Choline
(46)
Guanine
(45)
Ornithine
(45)
Riboflavin
(45)
Thymine
(45)
L-Tyrosine
(44)
Spermidine
(42)
Citric acid
(42)
Oleamide
(42)
L-Phenylalanine
(42)
Cytosine
(41)
Pantothenic acid
(41)
Azelaic acid
(41)
Thymidine
(41)
Deoxycholic acid
(39)
First Public Date
2014
(97)
2024
(81)
2025
(80)
2026
(63)
2023
(59)
2021
(59)
2017
(58)
2020
(56)
2018
(50)
2019
(45)
2022
(36)
2013
(34)
2015
(25)
2016
(20)
Modelling Approach
Ordinary differential equation model
(1)
Study status
Completed
(2)
Recruiting
(1)
Lab affiliation
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany
(5)
University of Victoria
(4)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany
(3)
1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine.
(2)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(2)
Department of Bioactivity and Food Analysis, Institute of Food Science Research (CIAL, CSIC-UAM, CEI UAM+CSIC), Nicolás Cabrera 9, 28049 Madrid, Spain
(2)
Laboratory of Membrane Biogenesis, University of Bordeaux, France
(2)
Laboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan
(2)
University Medical Center Goettingen, Department of Clinical Chemistry, Core Facility Proteomics
(2)
1 Neuroscience Group of Antioquia, Cellular and Molecular Neurobiology Area, Faculty of Medicine, SIU, University of Antioquia, Calle 70, No. 52-21, Medellin, Colombia. 2 Institute of Biology, Faculty of Exact and Natural Sciences, University of Antioquia, Medellin, Colombia.
(1)
1Cancer Research Program, Hospital del Mar Research Institute, Doctor Aiguader 88, Barcelona 08003, Spain. Centro de Investigación Biomédica en Red Cáncer (CIBERONC), Madrid, Spain.
(1)
Aarhus university
(1)
Animal Sciences Department, Ohio Sate University
(1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY
(1)
Bioanalytical Mass Spectrometry Facility Mark Wainwright Analytical Centre University of NSW Australia
(1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany Bioanalytics, Institute for Clinical Chemistry, University Medical Center Goettingen, Germany
(1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Utrecht, The Netherlands and Netherlands Proteomics Center, Utrecht, The Netherlands
(1)
Boston University
(1)
CEA-Marcoule Institute of Environnemental Biology and Biotechnology Department of Biochemistry and Nuclear Toxicology Biochemistry of Perturbed Systems Laboratory France
(1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS)
(1)
Cancer Sciences Unit, Faculty of Medicine, University of Southampton, Southampton, UK
(1)
Center for Regenerative Medicine, Boston University and Boston Medical Center, Boston, MA 02118, USA The Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA
(1)
Center for Translational Medicine, Lewis Katz School of Medicine at Temple University, 3500 N Broad St, MERB 949, Philadelphia, PA, 19140, USA.
(1)
Center of Systems Biology, Biomedical Research Foundation, Academy of Athens, Greece
(1)
Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas (CSIC) and Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Madrid 28040, Spain.
(1)
Chung-Ang University
(1)
College of Agronomy, Nanjing Agricultural University
(1)
College of Animal Science and Veterinary Medicine, Huazhong Agricultural University, Wuhan, China
(1)
College of Biological and Pharmaceutical Sciences, China Three Gorges University
(1)
College of Veterinary Medicine, Qingdao Agricultural University, Qingdao, 266109, China
(1)
Tags
pathogen
(60)
pathogen:bacterium
(49)
pathogen:fungus
(8)
wastewater
(4)
pathogen:virus
(2)
covid19
(1)
pathogen:protozoan
(1)
Keyword
Perla Occipital System
(1)
IsPrivate
False
(1)
Classification
bacteria
(49)
fungi
(8)
viruses
(2)
protozoa
(1)
Modification
2x(15)N labeled L-lysine
(2)
4x(15)N labeled L-arginine
(2)
4-tetrahydrothiazine-3-carboxylic acid
(1)
Study type
Transcription profiling by array
(961)
RNA-seq of coding RNA
(348)
ChIP-seq
(100)
ChIP-chip by tiling array
(84)
RNA-seq of coding RNA from single cells
(56)
Unknown experiment type
(50)
RNA-seq of total RNA
(43)
Other
(39)
Comparative genomic hybridization by array
(20)
RNA-seq of non coding RNA
(18)
Methylation profiling by array
(17)
Methylation profiling by high throughput sequencing
(17)
DNA-seq
(14)
ATAC-seq
(12)
ChIP-chip by array
(11)
Transcription profiling by RT-PCR
(10)
Genotyping by array
(8)
Single nucleus RNA sequencing
(8)
MicroRNA profiling by array
(8)
Animal - High-throughput sequencing
(7)
Transcription profiling by SAGE
(6)
RIP-seq
(6)
CUT&RUN
(5)
CLIP-seq
(4)
Hi-C
(4)
CLIP-Seq
(3)
Human - High-throughput sequencing
(3)
Human - One-color microarray
(3)
Transcription profiling by tiling array
(3)
Bisulfite-seq
(3)
Release Date
2025
(936)
2022
(798)
2023
(705)
2021
(698)
2024
(638)
2020
(553)
2014
(472)
2019
(435)
2015
(425)
2013
(417)
2016
(410)
2012
(363)
2018
(357)
2017
(322)
2011
(303)
2010
(293)
2008
(223)
2026
(221)
2009
(186)
2007
(117)
2006
(84)
2005
(70)
2004
(29)
2002
(26)
2003
(20)
2000
(17)
2001
(16)
1999
(12)
1998
(11)
1997
(4)
Location
Iran
(1)
Japan
(1)
Germany
(1)
France
(1)
Austria
(1)
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Coxiella burnetii C2 strain:C2
Coxiella burnetii C2 strain:C2 Genome sequencing
PRJNA197120
|
ENA
Cite
Enterobacter sp. C2 strain:C2
Enterobacter sp. C2 strain:C2 Genome sequencing
PRJNA755158
|
ENA
Cite
Arthrobacter sp. C2 strain:C2
Arthrobacter sp. C2 strain:C2 Genome sequencing and assembly
PRJNA556501
|
ENA
Cite
Flavobacterium sp. C2 strain:C2 | isolate:Brassica napus L. roots
Flavobacterium sp. C2 strain:C2 | isolate:Brassica napus L. roots Genome sequencing
PRJNA952790
|
ENA
Cite
Bacillus sp. C2-2
Bacillus sp. C2-2 Genome Sequencing
PRJNA162767
|
ENA
Cite
Priestia sp. C2 strain:C2
Priestia sp. C2 strain:C2 Genome sequencing
PRJNA1518361
|
ENA
Cite
Marinimicrobium sp. C2-29
Marinimicrobium sp. C2-29 Genome sequencing
PRJNA1100790
|
ENA
Cite
Venatorbacter sp. C2-1
Venatorbacter sp. C2-1 Genome sequencing and assembly
PRJNA555094
|
ENA
Cite
Leuconostoc sp. C2 strain:C2
Leuconostoc sp. C2 genome sequencing project
PRJNA67911
|
ENA
Cite
Roussoella sp. 2E-C2
Roussoella sp. 2E-C2 Genome sequencing
PRJNA989428
|
ENA
Cite
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