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Unknown
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Transcriptomics
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Homo sapiens
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mixed sample
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Staphylococcus aureus subsp. aureus MSSA476
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Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
(1)
Organisms
Homo sapiens
(56)
Mus musculus
(49)
lake water metagenome
(19)
sediment metagenome
(17)
Methanococcus maripaludis C5
(13)
soil metagenome
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Pseudomonas psychrophila
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Saccharomyces cerevisiae
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Calanus finmarchicus
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Bipolaris maydis C5
(2)
Intrasporangium calvum
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Bipolaris maydis
(2)
cold seep metagenome
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Plasmodium falciparum 3D7
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Xanthomonas oryzae pv. oryzae
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Staphylococcus hominis
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mangrove metagenome
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rat gut metagenome
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marine metagenome
(2)
Repository
biostudies-arrayexpress
(432)
ENA
(399)
MetabolomicsWorkbench
(146)
geo
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pride
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Tissue
Blood
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Cultured cells
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(16)
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(7)
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(30)
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(3)
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(3)
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(2)
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(2)
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(2)
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(2)
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(1)
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(1)
Normal tissue
(1)
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(1)
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(1)
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(1)
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(1)
ALS
(1)
Antibiotic resistance
(1)
Bacterial infection
(1)
Down syndrome
(1)
Drug addiction
(1)
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(1)
Krabbe disease
(1)
Ozone Stress
(1)
Placental Abruption
(1)
Technology Type
Mass Spectrometry
(213)
ESI
(140)
Bottom-up proteomics
(26)
Shotgun proteomics
(23)
Mass spectrometry
(14)
Data-independent acquisition
(14)
Data-dependent acquisition
(11)
EI
(10)
Mass spectrometry assay
(7)
Affinity purification coupled with mass spectrometry proteomics
(6)
Gel-based experiment
(5)
Chemical cross-linking coupled with mass spectrometry proteomics
(3)
Unspecified
(2)
SRM/MRM
(2)
DiaPASEF
(1)
Top-down proteomics
(1)
Instrument Platform
Illumina NovaSeq 6000
(91)
Illumina NovaSeq X
(38)
NextSeq 2000
(25)
NextSeq 500
(19)
Illumina HiSeq 2500
(17)
Illumina HiSeq 2000
(14)
NextSeq 550
(13)
Illumina HiSeq 4000
(12)
NA
(10)
Illumina MiSeq
(6)
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(4)
DNBSEQ-G400
(4)
Illumina HiSeq 1500
(3)
Desktop
(2)
PromethION
(2)
N/A
(2)
Active Motif Catalog No. 53150
(1)
ATAC-seq kit (Catalog No. 53150, Active Motif)
(1)
Nanodrop
(1)
KAPA RNA HyperPrep Kit
(1)
Qiagen RNEasy Mini ki
(1)
BD FACSAriaIIu cell sorter
(1)
RiboErase Roche
(1)
Qiagen RNaesy kit
(1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics
(1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics
(1)
Cell culture
(1)
Tapestri Platform
(1)
Macbook Pro 2018
(1)
BRB-seq tool and pipeline
(1)
Publication Date
2025
(167)
2026
(141)
2022
(37)
2011
(28)
2010
(26)
2024
(23)
2013
(22)
2021
(21)
2020
(20)
2016
(20)
2014
(19)
2012
(19)
2017
(16)
2015
(16)
2019
(15)
2023
(14)
2018
(14)
2009
(6)
2008
(5)
2007
(4)
2006
(3)
2005
(2)
CHEBI ID
CHEBI:16015
(4)
CHEBI:18186
(4)
CHEBI:28867
(4)
CHEBI:29016
(4)
CHEBI:73040
(4)
CHEBI:15746
(3)
CHEBI:16449
(3)
CHEBI:16610
(3)
CHEBI:16737
(3)
CHEBI:16811
(3)
CHEBI:17126
(3)
CHEBI:17138
(3)
CHEBI:17234
(3)
CHEBI:17295
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CHEBI:18211
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CHEBI:18237
(3)
CHEBI:18257
(3)
CHEBI:22660
(3)
CHEBI:25094
(3)
CHEBI:27266
(3)
CHEBI:27897
(3)
CHEBI:28044
(3)
CHEBI:28397
(3)
CHEBI:37024
(3)
CHEBI:48153
(3)
CHEBI:49033
(3)
CHEBI:68830
(3)
CHEBI:70749
(3)
CHEBI:71179
(3)
CHEBI:73024
(3)
Metabolite Name
Arginine
(2)
C0
(2)
C10
(2)
C10:1
(2)
C10:2
(2)
C12
(2)
C12-DC
(2)
C12:1
(2)
C14
(2)
C14:1
(2)
C14:1-OH
(2)
C14:2
(2)
C14:2-OH
(2)
C16
(2)
C16-OH
(2)
C16:1
(2)
C16:1-OH
(2)
C16:2
(2)
C16:2-OH
(2)
C18
(2)
C18:1
(2)
C18:1-OH
(2)
C18:2
(2)
C2
(2)
C3
(2)
C3-DC (C4-OH)
(2)
C3-OH
(2)
C3:1
(2)
C4
(2)
C4:1
(2)
First Public Date
2025
(58)
2020
(55)
2023
(36)
2021
(36)
2026
(33)
2022
(31)
2014
(29)
2024
(28)
2018
(26)
2017
(19)
2019
(18)
2013
(16)
2016
(8)
2015
(6)
Modelling Approach
Ordinary differential equation model
(2)
Lab affiliation
Professor
(5)
CRUK -CRUK Scotland nstitute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(2)
Chronic Disease Programme, UFIEC, Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain.
(2)
Department of Molecular Biosciences, University of South Florida, Tampa, FL, USA Center for Antimicrobial Resistance, University of South Florida, Tampa, FL, USA
(2)
Assistant Professor at the School of Biomedical Sciences and Department of Pathology, The University of Hong Kong, Hong Kong
(1)
Associate Professor Director of Proteomics and Mass Spectrometry Facility School of Biological Sciences Nanyang Technological University 60 Nanyang Drive, Singapore 637551 Tel: (65) 6514-1006; Fax: (65) 6791-3856 Email: sksze@ntu.edu.sg Web: http://proteomics.sbs.ntu.edu.sg/
(1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY
(1)
Biological Chemistry and Drug Discovery University of Dundee
(1)
Boston University
(1)
Brigham Young University
(1)
CRUK -CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(1)
Center of Systems Biology, Biomedical Research Foundation, Academy of Athens, Greece
(1)
College of Veterinary Medicine, The state Key Laboratory of Agricultural Microbiology, Cooperative Innovation Center of Substantial Pig Production, Wuhan, 433070, China
(1)
Department of Biochemistry, Genetics and Immunology, University of Vigo, Spain
(1)
Department of Biochemisty, The University of Western Ontario, London,Canada
(1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(1)
Department of Cell Biology, Microbiology, and Molecular Biology, University of South Florida, Tampa, Florida, USA
(1)
Department of Chemistry and Biochemistry Montana State University
(1)
Department of Chemistry, Kleiner lab, Princeton University, Princeton NJ, USA
(1)
Department of Clinical Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands
(1)
Department of Diagnosis and Surgery, School of Dentistry at Araraquara, Sao Paulo State University - UNESP, Araraquara, São Paulo, Brazil
(1)
Department of Medical Biochemistry and Microbiology, Uppsala University, Sweden
(1)
Department of Medical and Translational Biology, Umeå University, Umeå SE-901 87, Sweden
(1)
Department of Molecular Biology, Cristea Lab, Princeton University, USA
(1)
Department of Molecular Life Sciences University of Zurich Winterthurerstrasse 190 CH-8057 Zurich Switzerland
(1)
Department of Neurology, University of Sao Paulo, School of Medicine
(1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic
(1)
Department of Physiology and Biophysics, School of Medicine, Case Western Reserve University, Cleveland, OH 44106 USA
(1)
Distinguished Professor Department of Chemistry University of California Riverside
(1)
Division of Cancer Research, Ninewells Hospital and Medical School, University of Dundee, James Arrott Drive, DD1 9SY, Dundee, UK
(1)
Tags
pathogen
(33)
pathogen:bacterium
(27)
xref:PubMed:41444249
(5)
pathogen:protozoan
(4)
xref:PubMed:35228526
(3)
xref:PubMed:42563402
(3)
xref:PubMed:41027018
(3)
xref:PubMed:21514197
(3)
xref:PubMed:39011896
(2)
xref:PubMed:27356879
(2)
xref:PubMed:40148982
(2)
xref:PubMed:40449486
(2)
xref:PubMed:37365178
(2)
xref:PubMed:34932384
(2)
xref:PubMed:22084725
(2)
xref:PubMed:23943852
(2)
xref:PubMed:39435184
(2)
pathogen:fungus
(2)
xref:PubMed:36581616
(1)
xref:PubMed:36735294
(1)
xref:PubMed:31219654
(1)
xref:PubMed:31705733
(1)
xref:PubMed:35608301
(1)
xref:PubMed:36787231
(1)
xref:PubMed:27892792
(1)
xref:PubMed:29785339
(1)
xref:PubMed:35489715
(1)
xref:PubMed:35152735
(1)
xref:PubMed:38905344
(1)
xref:PubMed:23734193
(1)
IsPrivate
False
(2)
Classification
bacteria
(27)
protozoa
(4)
fungi
(2)
Modification
4-tetrahydrothiazine-3-carboxylic acid
(1)
Study type
RNA-seq of coding RNA
(123)
Transcription profiling by array
(103)
RNA-seq of coding RNA from single cells
(38)
RNA-seq of total RNA
(32)
Genotyping by array
(25)
Comparative genomic hybridization by array
(18)
ChIP-seq
(17)
DNA-seq
(7)
Methylation profiling by array
(7)
Methylation profiling by high throughput sequencing
(6)
ATAC-seq
(5)
RIP-seq
(5)
CUT&RUN
(4)
MicroRNA profiling by array
(3)
RNA-seq of non coding RNA
(3)
Transcription profiling by SAGE
(2)
Unknown experiment type
(2)
Human - Methylation microarray
(2)
ChIP-chip by tiling array
(2)
Cell line - One-color microarray
(2)
MicroRNA profiling by high throughput sequencing
(2)
Bisulfite-seq
(2)
Hi-C
(2)
Ribo-seq
(2)
Proteomic profiling by array
(2)
Genotyping by high throughput sequencing
(2)
RAN-seq of total RNA from single cells
(1)
CUT&Tag
(1)
CUT&TAG
(1)
Genotyping by mass spectrometer
(1)
Release Date
2025
(459)
2022
(343)
2023
(313)
2021
(311)
2024
(249)
2020
(238)
2019
(229)
2018
(161)
2026
(148)
2016
(143)
2017
(127)
2015
(119)
2014
(112)
2013
(98)
2011
(82)
2010
(82)
2012
(77)
2009
(61)
2008
(31)
2007
(25)
2005
(24)
2006
(21)
2004
(11)
2003
(7)
2002
(7)
2001
(7)
1999
(4)
2000
(3)
1998
(2)
1997
(1)
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Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - Low-2-C5
PRJNA1387538
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - H37-3-C5
PRJNA1387682
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - Low-1-C5
PRJNA1387826
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - H25-3-C5
PRJNA1387844
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - H37-4-C5
PRJNA1387847
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - H25-4-C5
PRJNA1388031
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - H25-1-C5
PRJNA1388036
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - H37-1-C5
PRJNA1387616
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - Low-3-C5
PRJNA1387607
|
ENA
Cite
Methanococcus maripaludis C5 strain:C5
Methanococcus maripaludis C5 transcriptome - Low-4-C5
PRJNA1387539
|
ENA
Cite
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