C57bl/6n mice - OmicsDI

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Unknown (490)
Genomics (352)
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Organisms

Mus musculus (166)
Andropogon gerardi (15)
Bacteria (15)
Canis lupus familiaris (15)
Chromatiales bacterium OalgGamma1 (15)
Clavibacter nebraskensis NCPPB 2581 (15)
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Fasciola (15)
Human alphaherpesvirus 1 strain 17 (15)
Human alphaherpesvirus 1 strain KOS (15)
Human betaherpesvirus 5 (15)
Human herpesvirus 2 strain 186 (15)
Mesocricetus auratus (15)
Miscanthus x giganteus (15)
Mus musculus (15)
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Spirochaeta sp. ELBA (15)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (15)
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Organisms

Mus musculus (268)
mouse gut metagenome (18)
rat gut metagenome (3)
feces metagenome (3)
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Repository

ENA (345)
biostudies-arrayexpress (84)
geo (81)
pride (15)
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ExpressionAtlas (1)
GNPS (1)
jPOST (1)

Tissue

Brain (2)
Cell culture (2)
Heart (2)
Kidney (2)
Abdominal adipose tissue (1)
Blood (1)
Blood cell (1)
Brown adipose tissue (1)
Cecum (1)
Cerebral white matter (1)
Epididymal white adipose tissue (1)
Fat body (1)
Fibroblast of cardiac tissue (1)
Liver (1)
Oligodendrocyte (1)
Raphe nuclei (1)
Skeletal muscle (1)
Subcutaneous adipose tissue (1)
Sublingual gland (1)
Submandibular gland (1)

Disease

Mental depression (1)
Obesity (1)
Salmonella infectious disease (1)

Technology Type

Mass Spectrometry (15)
Shotgun proteomics (10)
Mass spectrometry (7)
Mass spectrometry assay (4)
Bottom-up proteomics (3)
Gel-based experiment (2)
HDMSE (2)
Data-dependent acquisition (1)
Data-independent acquisition (1)
MSE (1)

Instrument Platform

NextSeq 2000 (6)
Illumina HiSeq 2500 (5)
Illumina HiSeq 2000 (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 4000 (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - negative - hilic (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
BGISEQ-500 (2)
NextSeq 500 (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - hilic (2)
Chromium Next GEM Chip G (1)
10X v3 (1)
Optimal Dual-mode mRNA Library Prep Kit (1)
TRIzol (1)
Clariom S Mouse (1)
Agilent Microarray Scanner (1)
Qiagen (1)
Illumina NovaSeq X (1)
NA (1)
N/A (1)
Illumina (1)
Q Exactive (1)
Orbitrap Fusion Lumos (1)
ZenoTOF 7600 (1)
6460 Triple Quadrupole LC/MS (Agilent) (1)
Direct infusion MS - positive (1)

Publication Date

2025 (23)
2022 (23)
2026 (18)
2021 (17)
2023 (17)
2014 (16)
2015 (15)
2020 (12)
2016 (11)
2024 (10)
2018 (10)
2012 (6)
2017 (5)
2013 (5)
2010 (4)
2011 (3)
2019 (2)
2004 (1)

CHEBI ID

CHEBI:16856 (4)
CHEBI:15741 (4)
CHEBI:18012 (4)
CHEBI:30887 (4)
CHEBI:16027 (4)
CHEBI:30915 (4)
CHEBI:17992 (3)
CHEBI:64561 (3)
CHEBI:4828 (3)
CHEBI:17202 (3)
CHEBI:17858 (3)
CHEBI:16750 (3)
CHEBI:15729 (3)
CHEBI:28875 (3)
CHEBI:16610 (3)
CHEBI:37024 (3)
CHEBI:27823 (3)
CHEBI:16335 (3)
CHEBI:40992 (3)
CHEBI:17509 (3)
CHEBI:7916 (3)
CHEBI:18019 (3)
CHEBI:15891 (3)
CHEBI:21547 (3)
CHEBI:16704 (3)
CHEBI:15318 (3)
CHEBI:16108 (3)
CHEBI:32816 (3)
CHEBI:16414 (3)
CHEBI:17191 (3)

Metabolite Name

Taurine (4)
Adenine (4)
Uridine (4)
Creatine (4)
L-Valine (4)
Taurochenodeoxycholic acid (3)
D-Glucose (3)
Sphingosine (3)
L-Lysine (3)
L-Aspartic acid (3)
L-Proline (3)
Ornithine (3)
L-Asparagine (3)
Pyridoxine (3)
L-Histidine (3)
Taurocholic acid (3)
Adenosine (3)
Urocanic acid (3)
Spermidine (3)
Raffinose (3)
L-Tryptophan (3)
L-Glutamine (3)
L-Serine (3)
Sucrose (3)
Creatinine (3)
L-Isoleucine (3)
Inosine (3)
Hypoxanthine (3)
D-Gluconic acid (2)
Delta-Tocotrienol (2)

First Public Date

2024 (61)
2025 (53)
2023 (48)
2026 (43)
2022 (28)
2020 (27)
2021 (23)
2014 (16)
2019 (14)
2018 (14)
2017 (9)
2016 (5)
2015 (3)
2012 (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (24)
RNA-seq of coding RNA from single cells (7)
Transcription profiling by RT-PCR (5)
ChIP-seq (3)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
MicroRNA profiling by array (1)

Release Date

2021 (69)
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2023 (61)
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2025 (51)
2020 (45)
2019 (40)
2016 (31)
2017 (30)
2015 (28)
2018 (26)
2014 (23)
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2012 (10)
2010 (6)
2011 (5)
2008 (1)
2007 (1)
2005 (1)

Lab affiliation

Boston University School of Medicine (1)
DIVAS department of veterinary medicine and animal science (1)
Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna (1)
Department of Endocrinology, Tongji Hospital Affiliated to Tongji University, School of Medicine, Tongji University, 1239 Siping Road, Shanghai 200092, China. (1)
Helmholtz-Centre for Environmental Research – UFZ, Department of Molecular Toxicology (1)
Institute of Experimental Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Martinistr. 52, 20246 Hamburg, Germany (1)
Institute of Physiology II, University of Münster, Münster, Germany (1)
King's BHF Centre of Research Excellence, King's College London, London, UK (1)
Max Planck Institute for Biology of Ageing, Germany (1)
Max Planck Institute for Biology of Ageing, Joseph-Stelzmann-Str. 9b, D-50931 Cologne, Germany Institute of Healthy Ageing, Department of Genetics, Evolution and Environment,University College London, Darwin Building, Gower Street, London WC1E 6BT, UK (1)
Max-Delbrück Center for Molecular Medicine (MDC) Robert-Rössle-Str. 10, 13125 Berlin, Germany (1)
Molecular Proteomics Laboratory (1)
Proteomics Group Max Planck Institute of Experimental Medicine Hermann-Rein-Str. 3 37075 Goettingen, Germany Tel: +49-551-3899313 Fax: +49-551-3899323 (1)
Stomatological Hospital of Chongqing Medical University (1)
Wellcome Trust Sanger Institute (1)

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