C7 - OmicsDI

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Transcriptomics (4525)
Unknown (1281)
Genomics (271)
Metabolomics (69)
Proteomics (53)
Other (4)
Genomic (1)
Clinical (1)
Models (1)

Organisms

Homo sapiens (1201)
Mus musculus (814)
Arabidopsis thaliana (283)
Drosophila melanogaster (141)
Rattus norvegicus (133)
Saccharomyces cerevisiae (114)
Escherichia coli (84)
Thermus thermophilus HB8 (71)
Candida albicans (62)
Streptococcus pneumoniae D39 (58)
Caenorhabditis elegans (50)
Schizosaccharomyces pombe (40)
Sus scrofa (40)
Oncorhynchus mykiss (37)
Bos taurus (32)
Danio rerio (28)
Gallus gallus (28)
Bacillus subtilis (27)
Pseudomonas putida (26)
Escherichia coli str. K-12 substr. MG1655 (23)
Sinorhizobium meliloti (21)
Salmonella enterica subsp. enterica serovar Typhimurium (20)
Mycobacterium tuberculosis (19)
Staphylococcus aureus (19)
Plasmodium falciparum (19)
Escherichia coli K-12 (19)
Macaca mulatta (17)
Streptococcus pneumoniae (17)
Zea mays (15)
Streptococcus pyogenes (14)

Organisms

Homo sapiens (38)
lake water metagenome (17)
Mus musculus (16)
sediment metagenome (14)
Methanococcus maripaludis C7 (13)
soil metagenome (8)
groundwater metagenome (5)
Tetrahymena thermophila (4)
hot springs metagenome (4)
rhizosphere metagenome (4)
Aspergillus niger (3)
marine metagenome (3)
Saccharomyces cerevisiae (3)
mangrove metagenome (2)
Rattus norvegicus (2)
Gallus gallus (2)
Penicillium sp. C7(2024) (1)
Talaromyces sp. F31 (1)
Penicillium sp. F2(2024) (1)
Corynebacterium diphtheriae C7 (beta) (1)
Pseudomonas sp. 273 (1)
Novosphingobium huizhouense (1)
Penicillium sp. F51 (1)
Penicillium sp. F50 (1)
Celerinatantimonas yamalensis (1)
Pseudoalteromonas sp. c7(2019) (1)
Pontivivens marinum (1)
Ruminiclostridium papyrosolvens C7 (1)
Lachnospiraceae bacterium C7 (1)
Marinobacter pelagius (1)

Repository

biostudies-arrayexpress (4579)
ENA (203)
MetabolomicsWorkbench (48)
geo (40)
pride (26)
MetaboLights (20)
MassIVE (15)
EGA (9)
iProX (7)
jPOST (2)
ExpressionAtlas (1)
dbGaP (1)
GNPS (1)
PanoramaPublic (1)
PMR (1)

Tissue

Blood (31)
Muscle (6)
Cell culture (6)
Brain (5)
Feces (5)
Liver (5)
Adipose tissue (4)
Brain (4)
Blood plasma (3)
Blood cell (3)
Cultured cells (2)
Urine (2)
Plant cell (2)
Fibroblast (2)
Permanent cell line cell (2)
Epithelial cell (2)
Blood (2)
Hypothalamus (1)
Nucleus accumbens (1)
Cecum (1)
Blood vessel (1)
Plantlet (1)
Neuron of cerebral cortex (1)
Keratinocyte (1)
Urine (1)
Skin (1)
Neuron (1)
Cell suspension culture (1)
Primary cell (1)
Monocyte (1)

Disease

Normal (37)
Melanoma (6)
Neuroblastoma (6)
Breast cancer (5)
Breast adenocarcinoma (4)
Colorectal cancer (3)
Not infected (3)
Hypertension (2)
Mitochondrial complex I deficiency (2)
Squamous Cell Carcinoma (2)
Primary tumor (2)
Rheumatoid arthritis (2)
Squamous cell carcinoma (2)
Hyperglycaemic (2)
Papillary thyroid carcinoma (2)
Chronic myelogenous leukemia (2)
Reference (2)
Mammary tumor (2)
Colorectal adenocarcinoma (2)
Hepatocellular carcinoma (2)
Adenocarcinoma (2)
Ovarian tumor (2)
Wilms tumour (2)
Multiple sclerosis (1)
Tumor bearing (1)
Aortic aneurysm (1)
Amyotrophic lateral sclerosis (1)
Lymphoblastic leukemia (1)
Benign nevi (1)
High bone mineral density (1)

Technology Type

Mass Spectrometry (74)
ESI (44)
Mass spectrometry (16)
Shotgun proteomics (14)
Data-dependent acquisition (6)
Bottom-up proteomics (5)
Mass spectrometry assay (4)
Unspecified (2)
EI (2)
SWATH MS (2)
Top-down proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2000 (90)
Illumina NovaSeq 6000 (87)
Illumina HiSeq 2500 (55)
NextSeq 500 (52)
Illumina HiSeq 4000 (40)
Scanning hardware (27)
NextSeq 550 (22)
Illumina MiSeq (19)
Axon- GenePix4000B (13)
GenePix 4000B [Axon Instruments] (13)
Affymetrix Fluidics Station 400 (11)
ScanArray 4000 [PerkinElmer] (10)
GenePix 4000A [Axon Instruments] (10)
Illumina Genome Analyzer II (10)
Axon GenePix 4000B scanning hardware (9)
G2565BA DNA microarray scanner [Agilent] (8)
ScanArray 4000XL [PerkinElmer] (8)
HiSeq X Ten (8)
ScanArray 5000 [PerkinElmer] (7)
Illumina Genome Analyzer IIx (7)
ScanArray Express HT [PerkinElmer] (7)
ScanArray Lite [PerkinElmer] (6)
Illumina HiSeq 1500 (6)
GenePix Personal 4100A [Axon Instruments] (5)
G2565AA DNA microarray scanner [Agilent] (5)
BAS-5000 [FUJIFILM] (5)
NextSeq 2000 (5)
MinION (5)
ScanArray scanning hardware (4)
G2500A Hewlett Packard (4)

Publication Date

2010 (721)
2013 (462)
2012 (429)
2011 (416)
2014 (408)
2015 (345)
2008 (331)
2009 (263)
2007 (209)
2016 (201)
2022 (121)
2006 (118)
2005 (92)
2021 (75)
2004 (64)
2023 (62)
2018 (62)
2026 (54)
2020 (53)
2017 (52)
2024 (49)
2019 (44)
2025 (41)
2003 (14)
2002 (1)

CHEBI ID

CHEBI:17268 (10)
CHEBI:17203 (9)
CHEBI:16414 (9)
CHEBI:17895 (9)
CHEBI:30769 (9)
CHEBI:17992 (8)
CHEBI:33508 (8)
CHEBI:17148 (8)
CHEBI:6650 (8)
CHEBI:16865 (8)
CHEBI:18019 (8)
CHEBI:16857 (8)
CHEBI:17191 (8)
CHEBI:15603 (8)
CHEBI:16643 (8)
CHEBI:17295 (8)
CHEBI:16828 (8)
CHEBI:32365 (7)
CHEBI:26984 (7)
CHEBI:29019 (7)
CHEBI:18257 (7)
CHEBI:15699 (7)
CHEBI:15824 (7)
CHEBI:16958 (7)
CHEBI:16000 (7)
CHEBI:30746 (7)
CHEBI:17196 (7)
CHEBI:16335 (7)
CHEBI:17053 (7)
CHEBI:18012 (7)

Metabolite Name

L-Proline (7)
Glyceric acid (7)
L-Valine (7)
L-Isoleucine (7)
L-Leucine (7)
D-Fructose (6)
Oxoglutaric acid (6)
D-Glucose (6)
L-Alanine (6)
L-Aspartic acid (6)
Succinic acid (6)
Maleic acid (6)
L-Threonine (6)
Fumaric acid (6)
Citric acid (6)
Malic acid (6)
Palmitic acid (6)
L-Tryptophan (6)
Sucrose (6)
L-Methionine (6)
L-Tyrosine (6)
L-Phenylalanine (6)
3-Phosphoglyceric acid (5)
Acetoacetic acid (5)
Oxalic acid (5)
Heptadecanoic acid (5)
Beta-Alanine (5)
Phosphoenolpyruvic acid (5)
Thymine (5)
L-Lysine (5)

First Public Date

2020 (40)
2025 (36)
2024 (18)
2018 (17)
2017 (16)
2026 (14)
2021 (13)
2019 (12)
2023 (11)
2022 (11)
2016 (5)
2013 (5)
2014 (4)
2015 (1)

Classification

bacteria (7)
fungi (4)

Modification

N6-dimethyl-L-lysine (1)

Study status

Completed (1)

Study type

Transcription profiling by array (3171)
RNA-seq of coding RNA (748)
RNA-seq of non coding RNA (146)
Unknown experiment type (77)
Other (50)
ChIP-seq (41)
Transcription profiling by tiling array (38)
RNA-seq of total RNA (31)
ChIP-chip by tiling array (24)
RNA-seq of coding RNA from single cells (24)
Comparative genomic hybridization by array (23)
Animal - High-throughput sequencing (20)
Transcription profiling by RT-PCR (17)
Cell line - High-throughput sequencing (16)
MicroRNA profiling by array (12)
ChIP-chip by array (11)
CLIP-seq (9)
Methylation profiling by high throughput sequencing (9)
RNAi profiling by array (8)
Genotyping by array (8)
High-throughput sequencing (7)
Methylation profiling by array (7)
Cell line - Two-color microarray (5)
MicroRNA profiling by high throughput sequencing (5)
RIP-seq (5)
DNA-seq (5)
Human - High-throughput sequencing (4)
Plant - High-throughput sequencing (4)
Transcription profiling by SAGE (3)
GRO-seq (2)

Release Date

2010 (733)
2013 (491)
2012 (451)
2014 (445)
2011 (433)
2015 (381)
2008 (341)
2009 (275)
2022 (270)
2016 (244)
2007 (216)
2021 (185)
2023 (182)
2025 (181)
2020 (160)
2024 (150)
2019 (136)
2006 (120)
2018 (113)
2017 (103)
2005 (97)
2004 (66)
2026 (61)
2003 (16)
2002 (4)
1999 (2)
1998 (2)
2001 (1)
1996 (1)

Lab affiliation

University Children's Hospital Zürich (2)
Dept of Experimental Medical Science, Wallenberg Neuroscience Center, Lund University, Sweden (2)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China (2)
Dept Clinical and Experimental Medicine, University of Catanzaro, Viale Europa, 88100 Catanzaro (Italy) (1)
Center of Systems Biology, Biomedical Research Foundation, Academy of Athens, Greece (1)
Head Proteomics Group Leiden University Medical Center |Center for Proteomic and Metabolomics | PO Box 9600 | Postal zone P1-Q | 2300 RC Leiden | The Netherlands (1)
Cincinnati Children’s Hospital Medical Center (1)
Discovery Analytical, GSK, Upper Providence, USA (1)
Shenzhen Key Laboratory of Modern Toxicology, Shenzhen Medical Key Discipline of Health Toxicology (2020-2024), Shenzhen Center for Disease Control and Prevention (1)
Department of Medicine, University of Cape Town & Groote Schuur Hospital, Cape Town, South Africa (1)
University Children's Hospital Zurich (1)
Institue of Chemistry,CAS (1)
Lecturer School of Cardiovascular and Metabolic Medicine & SciencesKing's College London (1)
University of Queensland School of Veterinary Science (1)
Head of Drug Discovery and Evaluation Charles University in Prague, BIOCEV Průmyslová 595 252 50 Vestec Czech Republic phone: +420 325 873 966 (1)
Proteomics Support Group, The Sainsbury Laboratory, Norwich, UK (1)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health & Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200 Copenhagen N, Denmark (1)
Dana-Farber Cancer Institute (1)
Proteomics of cellular signaling, Luxembourg Institute of Health, Strassen, Luxembourg. Department of Life Sciences and Medicine, University ofLuxembourg, Campus Belval, Luxembourg. (1)
Dep. of Dermatology, Medical Center ZBSA Center for Biological Systems Analysis University of Freiburg (1)
Biomedical Research Foundation, Academy of Athens Basic Research Center Soranou tou Ephessiou 4 115.27 Athens Greece Tel: +30 210 6597221 Fax: +30 210 6597545 www.bioacademy.gr (1)
Department of Biological Sciences, University of Alberta (1)
IRCCS Istituto Giannina Gaslini (1)

6236 Results

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