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Unknown (244063)
Transcriptomics (26452)
Genomics (10532)
Proteomics (5996)
Metabolomics (1013)
Genomic (232)
Models (205)
Other (78)
Methylation profiling (45)
Clinical (30)
Multiomics (8)
Flow cytometry (1)
Microarray (1)

Organisms

Homo sapiens (13563)
Mus musculus (7082)
Rattus norvegicus (1034)
Arabidopsis thaliana (817)
Drosophila melanogaster (551)
Saccharomyces cerevisiae (464)
Caenorhabditis elegans (343)
Danio rerio (234)
Escherichia coli (122)
Canis lupus familiaris (84)
Mycobacterium tuberculosis (54)
Escherichia coli str. K-12 substr. MG1655 (39)
Oryctolagus cuniculus (32)
Xenopus laevis (27)
Mammalia (23)
cellular organisms (22)
Rattus (13)
Rattus rattus (9)
Chlamydomonas reinhardtii (9)
Methanosarcina barkeri (4)
Mus (4)
Arabidopsis (3)
Cavia porcellus (3)
Balanus nubilus (2)
Drosophila (2)
Human immunodeficiency virus 1 (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Spodoptera frugiperda (1)
Thymus (1)
Opisthokonta (1)

Organisms

Homo sapiens (1785)
Mus musculus (1171)
seawater metagenome (579)
soil metagenome (431)
pond metagenome (381)
Rattus norvegicus (214)
rhizosphere metagenome (107)
Arabidopsis thaliana (93)
Staphylococcus aureus (78)
Bos taurus (68)
viral metagenome (57)
synthetic metagenome (46)
Danio rerio (46)
Drosophila melanogaster (43)
sediment metagenome (42)
marine metagenome (41)
salt marsh metagenome (39)
rice paddy metagenome (36)
marine sediment metagenome (33)
algae metagenome (31)
Populus trichocarpa (30)
Sus scrofa (30)
root metagenome (28)
freshwater metagenome (28)
Saccharomyces cerevisiae (28)
biocrust metagenome (24)
Escherichia coli (20)
Bifidobacterium breve UCC2003 (18)
mine drainage metagenome (18)
Gallus gallus (17)

Repository

biostudies-arrayexpress (27402)
ENA (8016)
pride (5208)
geo (1156)
MetaboLights (819)
EGA (588)
MassIVE (421)
dbGaP (232)
BioModels (196)
GNPS (177)
iProX (97)
PAXDB (94)
jPOST (79)
NODE (31)
GPMDB (28)
PanoramaPublic (19)
MetabolomicsWorkbench (17)
EVA (16)
PMR (7)
PeptideAtlas (3)
ExpressionAtlas (2)
Cell Collective (2)

Tissue

Blood (113)
Lung (104)
Bone marrow (53)
Blood (9)
Feces (3)
Muscle (2)
Liver (2)
Breast (2)
Umbilical cord (2)
Villi (2)
Ventricles (1)
Epididymal fat (1)
Unspecified (1)
Wine (1)
Plant (1)
Lung (1)
Hep G2 cells (1)
Urine (1)
Adipose tissue (1)
Cell line (1)
Duodenal cancer (1)
Duodenum (1)
Esophageal cancer (1)
Hematocyte (1)
Hepatocelluar carcinoma (1)
KYSE150 (1)
PBMC (1)
Prostate (1)
Rectum (1)
Renal (1)

Disease

Normal (143)
Breast cancer (136)
Colon cancer (78)
Alzheimer's disease (34)
Neuroblastoma (23)
Melanoma (23)
COVID-19 (21)
Glioblastoma (21)
Prostate cancer (20)
Multiple myeloma (17)
Amyotrophic lateral sclerosis (15)
Adenocarcinoma (11)
Colorectal cancer (8)
Gastric cancer (8)
Acute myeloid leukemia (8)
Breast carcinoma (7)
Rheumatoid arthritis (6)
Acute lymphoblastic leukemia (6)
Head and neck squamous cell carcinoma (6)
Cancer (6)
Breast adenocarcinoma (4)
Colorectal carcinoma (4)
Chronic lymphocytic leukemia (4)
Colorectal adenocarcinoma (4)
Infiltrating ductal carcinoma (3)
Calcium metabolism disease (2)
Heart disease (1)
Tuberculosis (1)
Hyperparathyroidism (1)
Hypoparathyroidism (1)

Technology Type

Illumina HiSeq 2000 (16)
Illumina 15K (8)
Illumina HiSeq 2000, ILLUMINA (6)
Illumina HiSeq 2500, ILLUMINA (3)
ILLUMINA, Illumina HiSeq 2500 (2)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina HiSeq 2500 (2)
Illumina Genome Analyzer II (2)
ILLUMINA, Low Pass Whole Genome Sequencing (LP-WGS), Illumina NovaSeq 6000, Illumina Genome Analyzer II, SNP array (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 4000 (1)
HiSeq X Ten, Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
ION_TORRENT, Ion Torrent PGM (1)
AB SOLiD 4 System, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
HiSeq X Ten (ILLUMINA), HiSeq X Ten, ILLUMINA (1)
Illumina OncoArray (1)
Illumina MiSeq, ILLUMINA (1)
Illumina HiSeq 4000, ILLUMINA (1)
HiSeq X Ten, ILLUMINA (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina MiSeq (1)
Illumina HiSeq 2000, Illumina Beadchip, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina MiSeq, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, unknown (1)
Illumina (various), Illumina (Various) (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina 610K Quad, Illumina 1.2M (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Affymetrix SNP 6.0, Illumina Genome Analyzer IIx (1)

Instrument Platform

Illumina NovaSeq 6000 (634)
NextSeq 500 (399)
Illumina HiSeq 2500 (392)
Illumina HiSeq 2000 (300)
Illumina HiSeq 4000 (295)
Illumina MiSeq (102)
NextSeq 550 (91)
NextSeq 2000 (68)
Illumina HiSeq 1500 (50)
Illumina Genome Analyzer IIx (43)
Illumina NovaSeq X (41)
Scanning hardware (31)
Axon GenePix 4000B scanning hardware (28)
Illumina HiSeq 3000 (27)
GenePix 4000B [Axon Instruments] (26)
Illumina Genome Analyzer II (26)
HiSeq X Ten (25)
Axon- GenePix4000B (21)
DNA Microarray Scanner BA [Agilent Technologies] (17)
DNBSEQ-G400 (17)
Illumina HiSeq 1000 (17)
Agilent 2100 Bioanalyzer (16)
G2565BA DNA microarray scanner [Agilent] (16)
- (16)
418 [Affymetrix] (14)
G2565AA DNA microarray scanner [Agilent] (13)
NA (13)
ScanArray 5000 [PerkinElmer] (12)
ScanArray Express HT [PerkinElmer] (12)
BGISEQ-500 (11)

Publication Date

2013 (3654)
2014 (3418)
2010 (3164)
2012 (3121)
2015 (3106)
2011 (2513)
2016 (2150)
2008 (1527)
2022 (1278)
2025 (1230)
2021 (1217)
2009 (1212)
2023 (1204)
2024 (1122)
2020 (989)
2026 (905)
2019 (870)
2018 (786)
2007 (669)
2017 (653)
2005 (380)
2006 (284)
2004 (139)
2003 (33)
2002 (5)
2001 (1)

UNIPROT ID/AC

Q99558 (5)
Q00653 (5)
O54910 (3)
Q60778 (3)
O88522 (3)
Q60680 (3)
O88351 (3)
P25799 (3)
Q9Z1E3 (3)
P35567 (3)
O81713 (3)
Q9LKL2 (3)
Q8L500 (3)
Q93WK5 (3)
Q9UD71 (3)
P01270 (3)
Q90W58 (3)
Q05116 (3)
P26696 (3)
Q99PS2 (2)
Q03114 (2)
O94916 (2)
P70039 (2)
P16298 (2)
P01137 (2)
P17612 (2)
P09560 (2)
P60568 (2)
P30969 (1)
P07490 (1)

ENSEMBL ID

ENSG00000077150 (4)
NewID (1)
ENSBTAG00000001414 (1)
ENSBTAG00000002507 (1)
ENSBTAG00000003758 (1)
ENSBTAG00000004230 (1)
ENSBTAG00000006045 (1)
ENSBTAG00000012586 (1)
ENSBTAG00000013468 (1)
ENSBTAG00000014423 (1)
ENSBTAG00000015980 (1)
ENSBTAG00000020527 (1)
ENSBTAG00000021746 (1)
ENSBTAG00000033186 (1)
ENSBTAP00000044884 (1)
ENSG00000170477 (1)
ENSG00000247315 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:16027 (133)
CHEBI:17234 (102)
CHEBI:48430 (87)
CHEBI:16761 (75)
CHEBI:15422 (62)
CHEBI:29108 (27)
CHEBI:16595 (9)
CHEBI:17489 (5)
CHEBI:15996 (5)
CHEBI:17552 (4)
CHEBI:16905 (3)
CHEBI:16908 (3)
CHEBI:18021 (3)
CHEBI:18367 (3)
CHEBI:33699 (3)
CHEBI:35222 (2)
CHEBI:33697 (2)
CHEBI:5656 (2)
CHEBI:16796 (2)
CHEBI:30837 (2)
CHEBI:47904 (2)
CHEBI:7125 (2)
CHEBI:29101 (2)
CHEBI:30907 (2)
CHEBI:65088 (2)
CHEBI:4208 (2)
CHEBI:47013 (2)
CHEBI:1989 (2)
CHEBI:371 (2)
CHEBI:41941 (2)

Metabolite Name

Creatine (103)
Glycine (99)
Hypoxanthine (91)
Citric acid (88)
Creatinine (87)
Adenosine (86)
Taurine (83)
Choline (82)
Ornithine (81)
Phenylalanine (80)
Adenine (80)
L-Phenylalanine (77)
Inosine (77)
Uracil (76)
Uridine (76)
L-Tyrosine (75)
Valine (73)
Glycine (72)
Serine (72)
Isoleucine (72)
Succinic acid (69)
Tyrosine (69)
Leucine (68)
Cytidine (68)
L-Valine (67)
Xanthine (66)
Guanosine (66)
Tryptophan (66)
Methionine (65)
L-Proline (65)

First Public Date

2014 (1507)
2025 (1238)
2024 (767)
2022 (751)
2026 (501)
2023 (463)
2021 (458)
2017 (435)
2019 (410)
2020 (407)
2018 (338)
2015 (270)
2013 (235)
2016 (232)
2012 (3)
2011 (1)

Modelling Approach

Ordinary differential equation model (148)
Constraint-based model (20)
Machine learning (1)
Dynamical characteristic (1)
Spatial characteristic (1)
Differential algebraic equation model (1)
Differential equation model (1)
Other (1)
Physiologically based pharmacokinetic model (1)
Population model (1)
Delayed differential equation model (1)

Study status

Recruiting (9)
Completed (9)
Not yet recruiting (3)
Ongoing (2)
Terminated (2)
Active, not recruiting (2)
Not provided (2)
Withdrawn (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (76)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (48)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (17)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (13)
Cellzome (12)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (12)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (12)
USDA-ARS (11)
IRIC-Université de Montréal (10)
University of Florida (10)
Bioplatforms Australia (9)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (9)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (8)
Cornell University (8)
Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Pacific Northwest National Laboratory (8)
University of Warwick (8)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (7)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (7)
Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (7)
IBCH RAS (7)
Moffitt Cancer Center Tampa, FL, USA (7)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (7)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (7)
Yale Cancer Biology Institute (7)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (6)
David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, USA (6)
Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (6)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (6)
Texas Tech University (6)

Keyword

Cetuximab (2)
Cisplatino Sandoz*EV 50mg 100M (1)
Personalized prevention (1)
Investigational Nutrigenetic Studies (1)
Biomaker (1)
Gastroscopy (1)
Gene polymorphism (1)
Magnesium (1)
NED state (1)
Tyrosine kinase inhibitors (1)
Well Tolerated Agent (1)
Pancreas and Liver Resections (1)
Recurrence-Free Survival (1)
Microsatellite instability (MSI) (1)
Mismatch repair (MMR) (1)
Integrative Medicine (1)
Complementary Medicine (1)
Alternative Medicine Antioxidants (1)
Protective Agents (1)
Physiological Effects of Drugs (1)
Micronutrients (1)
Growth Substances (1)
Antineoplastic Agents, Phytogenic (1)
Radiation-Sensitizing Agents (1)
Topoisomerase I Inhibitors (1)
Topoisomerase Inhibitors (1)
Adjuvant (1)
Colonic Diseases (1)
Iron substitution (1)
Iron deficiency anemia (1)

IsPrivate

False (196)

Model Flag

Non Kinetic (30)

Submitter Keywords

Immuno-oncology (7)
FROG (7)
Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)
COVID-19 (1)

Classification

bacteria (209)
protozoa (16)
viruses (12)
fungi (12)
helminths (2)

Modification

Not available (16)
4x(15)N labeled L-arginine (13)
2x(15)N labeled L-lysine (12)
57.021464 (11)
15.994915 (10)
4-tetrahydrothiazine-3-carboxylic acid (10)
N6 (7)
4 (3)
71.037114 (3)
N6-dimethyl-L-lysine (3)
+3amu) (2)
42.010565 (2)
0.984016 (1)
15.977156 (1)
227.126991 (1)
3'' (1)
4x(2)H labeled dimethylated residue (1)
79.966331 (1)
9.030194 (1)
Heavy form (1)
Heavy form - site K (1)
Medium form - site K (1)
Medium form - site N-term (1)

Study type

Transcription profiling by array (17983)
RNA-seq of coding RNA (2695)
ChIP-seq (1353)
Comparative genomic hybridization by array (797)
Methylation profiling by array (597)
RNA-seq of coding RNA from single cells (397)
RNA-seq of non coding RNA (383)
Unknown experiment type (363)
ChIP-chip by tiling array (355)
Other (321)
Methylation profiling by high throughput sequencing (259)
ChIP-chip by array (162)
Genotyping by array (151)
MicroRNA profiling by array (151)
DNA-seq (151)
Transcription profiling by tiling array (133)
Transcription profiling by RT-PCR (127)
RNA-seq of total RNA (115)
Proteomic profiling by array (79)
Cell line - High-throughput sequencing (72)
Animal - High-throughput sequencing (68)
ATAC-seq (49)
Human - High-throughput sequencing (46)
Transcription profiling by SAGE (41)
High-throughput sequencing (40)
RNAi profiling by array (36)
MicroRNA profiling by high throughput sequencing (31)
Animal - One-color microarray (30)
Human - One-color microarray (26)
RIP-seq (26)

Release Date

2022 (24350)
2021 (23501)
2023 (22654)
2025 (21209)
2020 (19678)
2024 (19594)
2019 (16356)
2018 (15094)
2016 (13416)
2015 (13378)
2017 (12392)
2014 (12093)
2013 (10316)
2012 (9172)
2011 (7940)
2010 (7843)
2009 (5235)
2008 (4615)
2026 (2880)
2007 (2790)
2006 (1874)
2005 (1510)
2004 (942)
2003 (683)
2002 (544)
2001 (443)
2000 (365)
1999 (228)
1998 (211)
1997 (117)

Location

United States (8)
Japan (5)
India (4)
Italy (4)
Germany (4)
France (3)
Netherlands (3)
Thailand (2)
Singapore (2)
Australia (2)
Africa (1)
Oceania (1)
South America (1)
Philippines (1)
Hong Kong (1)
South Africa (1)
Norway (1)
Taiwan (1)
Denmark (1)
Asia except Japan (1)
Egypt (1)
Europe (1)
North America (1)
Portugal (1)
Mexico (1)
Colombia (1)
Chile (1)
Israel (1)
United Kingdom (1)
Russia (1)

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Azotobacter vinelandii CA strain:CA

Azotobacter vinelandii CA strain:CA Genome sequencing

PRJNA186698 | ENA

Kribbella sp. CA-293567

Kribbella sp. CA-293567 Genome sequencing

PRJNA907737 | ENA

Streptomyces sp. CA-297274

Streptomyces sp. CA-297274 Genome sequencing

PRJNA1295790 | ENA

Amycolatopsis sp. CA-230715

Amycolatopsis sp. CA-230715 Genome sequencing and assembly

PRJNA639419 | ENA

Streptomyces sp. CA-256286 isolate:MDNA_WGS_65

Streptomyces sp. CA-256286 isolate:MDNA_WGS_65 Genome sequencing and assembly

PRJNA689435 | ENA

The absence of a Ca(2+) signal during mouse egg activation can affect development and gene expression patterns

The absence of a Ca(2+) signal during mouse egg activation can affect parthenogenetic preimplantation development, gene expression patterns, and blastocyst quality. Gene expression pattern of parthenogenetic mouse embryos by cycloheximide or Sr2+. Keywords: development or differentiation design Gene...

ORGANISM(S): Mus musculus

2010-06-10 | E-GEOD-5077 | biostudies-arrayexpress

Kutzneria sp. CA-103260 isolate:MDNA_WGS_14

Kutzneria sp. CA-103260 isolate:MDNA_WGS_14 Genome sequencing and assembly

PRJNA691205 | ENA

Ca. Lokiarchaeum ossiferum B35 proteomic analysis

Proteomic expression analysis of Ca. Lokiarchaeum ossiferum, strain B35, grown using casein hydrolysate as the main carbon source under anaerobic conditions

ORGANISM(S): Candidatus Lokiarchaeum sp. B-35

2025-03-14 | PXD059733 | Pride

Ca. lokiarchaeum ossiferum