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TranscriptomicsTranscription profiling of Arabidopsis rosette growth complete" stage vs. flower buds harvested at the \"first flower open" stage for Columbia Genotype
Comparison of leaves harvested at the "rosette growth complete" stage (3.90 from Boyes et al.) versus flower buds harvested at the "first flower open" stage (6.0 from Boyes et al.), Columbia Genotype. Leaf sample : Around 3 leaves per plants on 50 individual plants. Flower sample : around 10 flower ...
ORGANISM(S): Arabidopsis thaliana 
2004-09-01 | E-MEXP-94 | biostudies-arrayexpress
Transcriptomicsseed development-Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed - seed development - WP3 : Biodiversity of seed traits : state of the art - This experiment is a time course performed to choose the best harvesting point to maximise the number of detectable transcripts (8, 10, 12 and 14 dap). Keywords: time course 3 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2010-05-18 | E-GEOD-16242 | biostudies-arrayexpress
Transcriptomicsseed specific genes-Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed - seed specific genes - WP3 : Biodiversity of seed traits : state of the art - This experiment aimed to identify the genes expressed in the seeds vs siliques (easiest to harvest), and to know if the expression pattern of the whole silique could provide a valuable information. ...
ORGANISM(S): Arabidopsis thaliana 
2010-05-18 | E-GEOD-16244 | biostudies-arrayexpress
Transcriptomicspreliminary experiment:repetability-Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed - preliminary experiment:repetability - WP3 : Biodiversity of seed traits : state of the art - The third experiment is a comparison of the transcriptome of two parents (Bay0,Sha) and two RILs (104, 140) in loop experimental design. Plants are grown in individual pots on a tray...
ORGANISM(S): Arabidopsis thaliana 
2009-05-29 | E-GEOD-16241 | biostudies-arrayexpress
Transcriptomicseqtl analysis (random pair design)-Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed - eqtl analysis (random pair design) - WP3 : Biodiversity of seed traits : state of the art - Comparison of the developping seed transcriptome in 160 Bay0/Sha Recombinant Inbred Lines (RILs) at 10 days after pollinisation. Keywords: genotype and ecotype comparison 80 dye-swap...
ORGANISM(S): Arabidopsis thaliana 
2009-06-05 | E-GEOD-16393 | biostudies-arrayexpress
TranscriptomicsEmbryo seed development: Establishing the network of seed gene expression and analysis of its biodiversity
gnp3_tri33-arabidoseed. Embryo seed development. WP3: Biodiversity of seed traits: state-of-the-art. Analysis of the expression of small RNAs precursors in the seed development of Arabidopsis thaliana. 12 dye-swaps. Time course.
ORGANISM(S): Arabidopsis thaliana 
2011-04-22 | E-GEOD-28311 | biostudies-arrayexpress
TranscriptomicsSAGE analysis of wild-type mouse brain regions
SAGE libraries generated from various brain regions of 8- to 12-week-old male C57BL/6 mice. Keywords: Micro-dissection, Brain regions, SAGE Sau3A I was used as the anchoring enzyme and Bsmf I as the tagging enzyme. Data are provided after linker removal.
ORGANISM(S): Mus musculus 
2008-02-05 | E-GEOD-7594 | biostudies-arrayexpress
TranscriptomicsLongSAGE analysis of wild-type mouse brain regions
LongSAGE libraries generated from various brain regions of 8- to 12-week-old male C57BL/6 mice. Keywords: Micro-dissection, Brain regions, SAGE Sau3A I was used as the anchoring enzyme and Mme I as the tagging enzyme. Data are provided after linker removal.
ORGANISM(S): Mus musculus 
2008-02-05 | E-GEOD-7593 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of indole-3-acetic acid at physiological concentrations (IAA) treatment of Arabidopsis seedlings
To demonstrate the analysis of differential expression using CATMA v1 arrays, Arabidopsis seedlings were treated with indole-3-acetic acid at physiological concentrations. The seedlings were germinated in liquid medium, and treated with indole-3-acetic acid for 30, 120 or 240 minutes. Changes in exp...
ORGANISM(S): Arabidopsis thaliana 
2004-05-31 | E-MEXP-65 | biostudies-arrayexpress
UnknownGeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.
Not available
S-EPMC540069 | biostudies-literature
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