Cajal bodies - OmicsDI

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Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
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Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)
Chromium X instrument (10x Genomics); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781); Human Gene Expression Probe Set v1.0.1 (10x Genomics) (1)
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Sterile surgical instrument set (scalpels, tissue forceps, dissection scissors), animal operating table, biological safety cabinet (1)
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Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
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CHEBI ID

CHEBI:18237 (2)
CHEBI:22660 (2)
CHEBI:17822 (2)
CHEBI:16449 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)
CHEBI:28044 (2)
CHEBI:229203 (1)
CHEBI:28742 (1)
CHEBI:29083 (1)
CHEBI:229981 (1)
CHEBI:132284 (1)
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CHEBI:28825 (1)
CHEBI:81190 (1)
CHEBI:145240 (1)
CHEBI:43295 (1)
CHEBI:143241 (1)

Metabolite Name

TREHALOSE (1)
N-METHYL-GLUTAMATE (1)
METHYLTHIOADENOSINE (1)
METHIONINE (1)
Homothreonine (1)
Dioctylamine (1)
DEOXYGUANOSINE (1)
CARNITINE (1)
ALPHA-AMINOADIPATE (1)
ALANINE (1)
5-O-methylvisammioside (1)
5,6-DIHYDROURACIL (1)
4-AMINOBUTANOATE (1)
TRIGONELLINE (1)
Alanine betaine (1)
Tributylamine (1)
Coniine (1)
Lotusine (1)
THYMIDINE (1)
SUCROSE (1)
GUANOSINE (1)
DEOXYCYTIDINE (1)
CYTIDINE (1)
DEOXYCARNITINE (1)
4-HYDROXY-L-PROLINE (1)
3-Guanidinopropionic acid (1)
Indoline (1)
Fructose 6-phosphate (1)
Pentanedioic acid (1)
Myristic acid (1)

First Public Date

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Study type

RNA-seq of coding RNA from single cells (106)
Transcription profiling by array (10)
RNA-seq of coding RNA (6)
Single nucleus RNA sequencing (5)
Differential (4)
Cell line - Single-cell sequencing (3)
Animal - Single-cell sequencing (3)
ScATAC-seq (2)
ChIP-seq (2)
RNA-seq of non coding RNA from single cells (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

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2009 (7)
2016 (6)
2002 (6)
2005 (5)
2003 (5)
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2000 (3)
2001 (3)
2008 (2)
1999 (1)

Lab affiliation

UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (4)
Nicolaus Copernicus University in Torun, Torun, Poland (1)
Department of Plant Biochemistry, Centre for Plant Molecular Biology (ZMBP), Eberhard Karls University, D-72076 Tübingen, Germany (1)
Institute of Plant and Microbial Biology, Academia Sinica (1)
Bioanalytical Mass Spectrometry, Max-Planck-Institute for Biophysical Chemistry, Goettingen, Germany (1)
Institute of Molecular Biology (IMB) (1)

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A plant Cajal body proteome reveals kingdom-specific components

Cajal bodies from Nicotiana benthamiana were isolated using fluorescence-activated particle sorting (FAPS) and subjected to LC-MS/MS for comprehensive proteomic profiling. In parallel, TurboID-based proximity labeling was performed using Cajal body-resident proteins to identify their proximal proteo...

ORGANISM(S): Nicotiana benthamiana

2026-09-21 | PXD065938 | Pride

Disruption of ZC3H15 Compromises Telomere Length Maintenance by Sequestering Telomerase within Cajal bodies

Telomere homeostasis, crucial for various biological processes, relies on telomerase activity. We identified ZC3H15 as a novel telomerase-interacting protein. Its deletion unexpectedly increased telomerase activity but led to shortened telomeres and cellular senescence. ZC3H15 interacts with telomer...

ORGANISM(S): Homo Sapiens

PXD052036 |

Cajal bodies are linked to genome conformation

PRJNA312097 | ENA

FLASH is an essential component of Cajal bodies.

Not available

S-EPMC1578500 | biostudies-literature

WRAP53 is essential for Cajal body formation and for targeting the survival of motor neuron complex to Cajal bodies.

Not available

S-EPMC2970535 | biostudies-literature

Assembly of the nuclear transcription and processing machinery: Cajal bodies (coiled bodies) and transcriptosomes.

Not available