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TranscriptomicsIron-starvation effect on transcriptome of Pseudomonas fluorescens Pf-5: iron(II) chloride
Transcriptomic profiling of Pseudomonas fluorescens Pf-5 comparing iron(II) chloride supplemented grown culture against non-iron treated grown culture in M9 minimal media Two-condition experiment, iron(II) chloride supplemented culture versus non-iron treated culture. 4 biological replicates includi...
ORGANISM(S): Pseudomonas fluorescens 
2011-05-16 | E-GEOD-29319 | biostudies-arrayexpress
TranscriptomicsThe effect of Iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5: iron(III) chloride
Transcriptomic profiling of Pseudomonas fluorescens Pf-5 comparing iron(III) chloride supplemented grown culture against non-iron treated grown culture in M9 minimal media Two-condition experiment, iron(III) chloride supplemented culture versus non-iron treated culture. 3 biological replicates inclu...
ORGANISM(S): Pseudomonas fluorescens 
2011-05-16 | E-GEOD-29320 | biostudies-arrayexpress
TranscriptomicsCalcium is a global regulator in Vibrio parahaemolyticus
Here we probe the global response to calcium in the marine bacterium and pathogen Vibrio parahaemolyticus by using transcriptome, reporter and phenotypic analyses. Swarming gene expression and motility were enhanced by calcium. Calcium also stimulated expression and function of one of the organism...
ORGANISM(S): Vibrio parahaemolyticus 
2010-11-05 | E-GEOD-22190 | biostudies-arrayexpress
TranscriptomicsRNA-seq of IL-4 stimulated human keratinocytes
In this study we aim to determine the role of IL-4/STAT6 in gene expression in human keratinocytes using RNA-sequencing approach. Human keratinocytes were cultured for 2 or 5 days with calcium chloride to induce terminal differentiation as determined by the expression of epidermal differentiation co...
ORGANISM(S): Homo sapiens 
2015-12-15 | E-GEOD-59275 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of chloride channel ClC-2 knock out mice with a Leukoencephalopathy-like phenotype vs.wild type
ClC-2 is a broadly expressed Cl- channel of the CLC family of Cl- channels and transporters which is abundantly expressed in brain. Here it was proposed to participate in lowering the cytoplasmic Cl- concentration of neurons, a process that establishes an inhibitory response to the neurotransmitters...
ORGANISM(S): Mus musculus 
2008-05-01 | E-MEXP-1028 | biostudies-arrayexpress
TranscriptomicsIdentification of the calcium-responsive genes dependent on CrzA in the filamentous fungus Aspergillus nidulans
Microarray analysis was used to identify the calcium-responsive genes dependent on CrzA in the filamentous fungus Aspergillus nidulans. In order to identify such genes, we conducted the two types of experiment. One was a comparison between wild type with calcium treatment and wild type without cal...
ORGANISM(S): Emericella nidulans 
2008-10-02 | E-GEOD-12953 | biostudies-arrayexpress
TranscriptomicsIron-starvation effect on transcriptome of Pseudomonas fluorescens Pf-5
This SuperSeries is composed of the following subset Series: GSE29319: Iron-starvation effect on transcriptome of Pseudomonas fluorescens Pf-5: iron(II) chloride GSE29320: Iron-starvation effect on transcriptome of Pseudomonas fluorescens Pf-5: iron(III) chloride Refer to individual Series
ORGANISM(S): Pseudomonas fluorescens 
2011-05-16 | E-GEOD-29322 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Aspergillus fumigatus delta crzA mutant upon 10 and 30 minutes treatment with CaCl2 (200 mM)
CRZ is a C2H2 zinc finger transcription factor activated by calcineurin, a protein phosphatase activated by calcium-calmodulin, in different stress conditions related with calcium cell accumulation. CRZ binds to a specific element on the promoter region of genes called CDRE (calcineurin-dependent re...
ORGANISM(S): Aspergillus fumigatus 
2010-06-20 | E-GEOD-15432 | biostudies-arrayexpress
TranscriptomicsA calcium-induced signaling cascade leading to osteogenic differentiation of human bone marrow-derived mesenchymal stromal cells
The response of osteoprogenitors to calcium (Ca2+) is of primary interest for both normal bone homeostasis and the clinical field of bone regeneration. The latter makes use of calcium phosphate-based bone void fillers to heal bone defects, but it is currently not known how Ca2+ released from these c...
ORGANISM(S): Homo sapiens 
2018-10-06 | E-MTAB-7222 | biostudies-arrayexpress
TranscriptomicsCalcium deficient transcriptome analysis of rice
Calcium is an essential macronutrient and plant requires it in large amounts for normal growth and development. This ion participated in innumerable processes and affects nearly all aspects of plant growth and development such as signal transduction, metabolism of lipids, proteins, and carbohydrates...
ORGANISM(S): Oryza sativa 
2014-01-17 | E-GEOD-50917 | biostudies-arrayexpress
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