Campbell J J - OmicsDI

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Unknown (6402)
Transcriptomics (105)
Genomics (104)
Proteomics (85)
Metabolomics (8)
Models (2)

Organisms

Homo sapiens (155)
Chlamydomonas reinhardtii (59)
Pseudomonas canadensis (59)
Human alphaherpesvirus 1 strain 17 (59)
Marchantia polymorpha subsp. ruderalis (59)
Methylocystis sp. (59)
Exiguobacterium sp. SH31 (59)
Porites pukoensis (59)
Porphyromonas gingivalis W83 (59)
Mus musculus (24)
Saccharomyces cerevisiae (6)
Nostoc punctiforme PCC 73102 (2)
Populus balsamifera (2)
Burkholderia multivorans (2)
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Solanum tuberosum (2)
Burkholderia cenocepacia (2)
Simiiformes sp. (1)
Mammalia (1)
Nostoc punctiforme (1)
Roseburia inulinivorans DSM 16841 (1)
Culex quinquefasciatus (1)
Burkholderia lata (1)
Burkholderia ambifaria (1)
Aspergillus niger (1)
Populus maximowiczii x Populus nigra (1)
Columba livia (1)
Mycobacterium tuberculosis (1)
Oncorhynchus mykiss (1)
Pseudomonas aeruginosa (1)

Repository

biostudies-arrayexpress (123)
EGA (94)
pride (59)
MassIVE (11)
MetaboLights (7)
PeptideAtlas (4)
BioModels (2)
GNPS (1)
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Tissue

Cell culture (10)
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Disease

Disease free (4)
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Normal (1)
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Inflammation (1)
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Facioscapulohumeral muscular dystrophy (1)
Lymphoma (1)
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Prostate cancer (1)
Parkinson's disease (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (59)
Shotgun proteomics (30)
SWATH MS (9)
Gel-based experiment (8)
Bottom-up proteomics (8)
Affinity purification coupled with mass spectrometry proteomics (7)
Illumina HiSeq 2000 (6)
Mass spectrometry (6)
Data-dependent acquisition (4)
Illumina Genome Analyzer II (3)
Data-independent acquisition (3)
Illumina HiSeq 2500 (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina_660K/Illumina_670K (1)
Life Tech - Solid (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
DiaPASEF (1)
SRM/MRM (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

NextSeq 500 (4)
Q Exactive (4)
Illumina HiSeq 4000 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Xevo G2-XS QTof (2)
TSQ Altis (2)
SYNAPT G2-Si (2)
Xevo G2 XS Tof (2)
Q Exactive HF-X (2)
LTQ Orbitrap Elite (2)
LTQ FT (2)
LTQ Orbitrap XL (2)
Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer II (1)
BGISEQ-500 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
QTRAP 6500 (1)
SolariX (1)
TripleTOF 5600 (1)
Orbitrap Fusion ETD (1)
Orbitrap Exploris 480 (1)
Orbitrap Eclipse (1)
Q Exactive Plus (1)
LTQ Orbitrap (1)
Xevo TQ MS (Waters) (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (31)
2020 (17)
2011 (16)
2022 (15)
2021 (13)
2015 (12)
2012 (12)
2010 (12)
2008 (12)
2014 (11)
2023 (11)
2025 (8)
2019 (7)
2018 (6)
2007 (6)
2026 (6)
2009 (5)
2024 (3)
2005 (2)
2006 (1)
2004 (1)
2016 (1)

UNIPROT ID/AC

O53978_MYCTU (1)
Y539_MYCTU (1)
DNAJ2_MYCTU (1)
Y3329_MYCTU (1)
I6Y498_MYCTU (1)
I6XHD6_MYCTU (1)
Y2026_MYCTU (1)
VPB47_MYCTU (1)
I6X7Z3_MYCTU (1)
I6WXK4_MYCTU (1)
O86336_MYCTU (1)
Y221_MYCTU (1)
CYA1_MYCTU (1)
VPB49_MYCTU (1)
O06396_MYCTU (1)
O50444_MYCTU (1)
CDDTR_MYCTU (1)
Y038_MYCTU (1)
I6YC95_MYCTU (1)
Y1812_MYCTU (1)
GLPD2_MYCTU (1)
VPB45_MYCTU (1)
O06583_MYCTU (1)
P95187_MYCTU (1)
O33221_MYCTU (1)
MAOX_MYCTU (1)
O05805_MYCTU (1)
HTDX_MYCTU (1)
Y474_MYCTU (1)
O53445_MYCTU (1)

CHEBI ID

CHEBI:25094 (5)
CHEBI:17750 (5)
CHEBI:32816 (5)
CHEBI:15354 (5)
CHEBI:17368 (5)
CHEBI:78320 (4)
CHEBI:27266 (4)
CHEBI:24898 (4)
CHEBI:26271 (4)
CHEBI:27570 (4)
CHEBI:28300 (4)
CHEBI:16449 (4)
CHEBI:22653 (4)
CHEBI:26986 (4)
CHEBI:18186 (4)
CHEBI:15356 (4)
CHEBI:15676 (4)
CHEBI:28044 (4)
CHEBI:18237 (4)
CHEBI:29016 (4)
CHEBI:16811 (4)
CHEBI:17234 (4)
CHEBI:30915 (4)
CHEBI:25017 (4)
CHEBI:17822 (4)
CHEBI:15940 (4)
CHEBI:16610 (4)
CHEBI:15428 (4)
CHEBI:17126 (4)
CHEBI:17568 (4)

Metabolite Name

Putrescine (3)
2-hydroxyglutarate (3)
Alpha-ketoglutarate (3)
Spermidine (3)
Betaine (3)
Choline (3)
Hypoxanthine (3)
Cytidine 2',3'-cyclic monophosphate (2)
Guanosine-2',3'-cyclic monophosphate (2)
Ergosterol (2)
Acetoacetate (2)
2'-O-methylguanosine (2)
Nicotinamide adenine dinucleotide (NAD+) (2)
Cytidine 5'-diphosphocholine (2)
3-hydroxymyristate (2)
2-palmitoleoyl-GPC (16:1)* (2)
1-oleoyl-GPI (18:1)* (2)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2)* (2)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (2)
Glycerophosphoinositol* (2)
Glycerophosphoserine* (2)
Homoserine (2)
N-acetylmethionine sulfoxide (2)
Linoleoyl ethanolamide (2)
3-hydroxylaurate (2)
3-hydroxydecanoate (2)
1-stearoyl-2-oleoyl-GPE (18:0/18:1) (2)
1-palmitoyl-GPI (16:0) (2)
1-palmitoyl-GPC (16:0) (2)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (2)

IsPrivate

False (2)

First Public Date

2020 (1)

Modelling Approach

Physiologically based pharmacokinetic model (1)
Ordinary differential equation model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (68)
RNA-seq of coding RNA (17)
Proteomic profiling by array (9)
ChIP-seq (8)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA from single cells (4)
Unknown experiment type (3)
High-throughput sequencing (2)
Genotyping by array (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (762)
2021 (651)
2025 (625)
2023 (608)
2024 (536)
2020 (510)
2018 (412)
2019 (408)
2015 (302)
2016 (286)
2017 (271)
2014 (233)
2013 (199)
2012 (159)
2011 (150)
2010 (101)
2026 (71)
2009 (70)
2008 (52)
2007 (41)
2006 (24)
2005 (15)
2003 (14)
2002 (8)
2004 (6)
2001 (5)
1999 (2)
1998 (2)
2000 (1)
1979 (1)

Lab affiliation

Professor, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (3)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
University of Missouri-Columbia (2)
Professor. Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (2)
Centre for Proteome Research Institute of Integrative Biology University of Liverpool Biosciences Building Crown Street Liverpool L69 7ZB UK (1)
Biomedical Proteomics Platform, Department of Health Sciences and Technology, ETH Zurich, 8093 Zurich, Switzerland Institute of Molecular Systems Biology at the Department of Biology, ETH Zurich, Zurich 8093, Switzerland (1)
Institute of Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB (1)
Laboratory of Bacteriology, The Rockefeller University, New York, NY 10065, USA Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065, USA (1)
GlaxoSmithKline (GSK) (1)
Neurodevelopmental pharmacology lab, Institute of Pharmacology and Toxicology, University of Zurich, Switzerland (1)
Division of Cancer Sciences, University of Manchester, School of Medical Sciences, Faculty of Biology, Medicine and Health, 5th Floor Research, St Mary’s Hospital, Oxford Road, Manchester M13 9PL. (1)
Human Biology Division, Fred Hutchinson Research Center, Seattle, WA, USA. (1)
Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA (1)
Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK, LS2 9JT (1)
Institute of Clinical Chemistry, Bioanalytics, University Medical Center Göttingen, Göttingen, Germany (1)
Einstein Professor of Biochemistry Head, Institute of Biochemistry, Charité University Medicine, Berlin markus.ralser@charite.de Senior Group Leader, The Francis Crick Institute, London markus.ralser@crick.ac.uk UK 0044 743 5315249 DE 0049 30 450528141 (1)
Howard Hughes Medical Institute, Senator Paul D. Wellstone Muscular Dystrophy Specialized Research Center, Department of Molecular Physiology and Biophysics and Department of Neurology, Roy J. and Lucille A. Carver College of Medicine, The University of Iowa; Iowa City, Iowa, 52242; USA. (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Dept of Chemistry, University of Illinois at Urbana-Champaign (1)
University of Copenhagen Department of Biomedical Sciences Integrative Circulation Division Blegdamsvej 3B København N, DK-2200 (1)
Head of Diabetes Nestlé Institute of Health Sciences SA Campus EPFL Quartier de l'innovation, bâtiment G 1015 Lausanne (Switzerland) (1)
Department of Genome Sciences, University of Washington, Seatte, WA, USA (1)
Centre for Haemato-oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Division of Cancer Sciences, University of Manchester (1)
Cell and Developmental Biology, School of Life Sciences, University of Dundee, DD1 4HN (1)
Knight Cardiovascular Institute Oregon Health & Science University Portland, Oregon USA (1)
Helmholtz diabetes center (1)

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PROTOCOL: Assessment of outcome reporting bias in studies included in Campbell systematic reviews

Not available

S-EPMC10210598 | biostudies-literature

Expression data from C57BL/6J and MRL/MpJ hearts following acute myocardial infarction

The Murphy Roth Large (MRL) mouse, a strain capable of regenerating right ventricular myocardium, has a high post-myocardial infarction (MI) survival rate compared with C57BL6/J (C57) mice. The biological processes responsible for this survival advantage are unknown. We compared acute post-MI gene e...

ORGANISM(S): Mus musculus

2010-05-27 | E-GEOD-19322 | biostudies-arrayexpress

Mega-map of systematic reviews and evidence and gap maps on the interventions to improve child well-being in low- and middle-income countries.

Not available

S-EPMC8356294 | biostudies-literature

PROTOCOL: An evidence and gap map of studies of implementation issues for interventions for those affected by and at risk of homelessness in high-income countries.

Not available

S-EPMC9942265 | biostudies-literature

Directional wave buoy data measured near Campbell Island, New Zealand.

Not available

S-EPMC8443698 | biostudies-literature

1015. Gastrointestinal (GI) Adverse Events With Darunavir/Cobicistat/Emtricitabine/Tenofovir Alafenamide (D/C/F/TAF) Through Week 96: An AMBER Post Hoc Analysis

Not available

S-EPMC7776806 | biostudies-literature

Reliability of the Korean version of the Richards-Campbell Sleep Questionnaire.

Not available

S-EPMC7483016 | biostudies-literature

Transcriptome analysis of a N. punctiforme sigG mutant

Nostoc punctiforme is a filamentous cyanobacterium capable if differentiating normal vegetative cells into nitrogen fixing heterocysts and spore-like akinetes. Here the effects of a sigma factor (sigG) mutation on the transcriptome was analyzed under 1) normal vegetative growth, and 2) following a...

ORGANISM(S): Nostoc punctiforme

2015-09-01 | E-GEOD-61442 | biostudies-arrayexpress

The methodological and reporting characteristics of Campbell reviews: A systematic review.

Not available

S-EPMC8356304 | biostudies-literature

PROTOCOL: Intergenerational interventions and their effect on social and mental wellbeing of both children and older people-A mapping review and evidence and gap map.

Not available

S-EPMC9107595 | biostudies-literature

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