Campbell L L - OmicsDI

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Unknown (4819)
Transcriptomics (192)
Proteomics (113)
Genomics (106)
Metabolomics (9)
Models (2)
Genomic (1)
Other (1)

Organisms

Homo sapiens (235)
Mus musculus (59)
Saccharomyces cerevisiae (10)
Burkholderia cenocepacia (9)
Burkholderia multivorans (5)
Solanum tuberosum (5)
Staphylococcus aureus (3)
Rattus norvegicus (3)
Perca flavescens (2)
Nostoc punctiforme PCC 73102 (2)
Populus balsamifera (2)
Aspergillus niger (2)
Aedes aegypti (2)
Arabidopsis thaliana (2)
Mammalia (1)
Simiiformes sp. (1)
Nostoc punctiforme (1)
Acropora millepora (1)
Culex quinquefasciatus (1)
Burkholderia lata (1)
Burkholderia ambifaria (1)
Leishmania major (1)
Pectobacterium atrosepticum (1)
Populus maximowiczii x Populus nigra (1)
Lepeophtheirus salmonis (1)
Gasterosteus aculeatus (1)
Columba livia (1)
Zea mays (1)
Schizosaccharomyces pombe (1)
Mycobacterium tuberculosis (1)

Organisms

Medicago ruthenica (2)

Repository

biostudies-arrayexpress (227)
EGA (87)
pride (50)
PeptideAtlas (26)
MassIVE (16)
MetaboLights (8)
ENA (3)
BioModels (2)
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dbGaP (1)
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PanoramaPublic (1)

Tissue

Others (17)
Cell culture (11)
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Disease

Breast cancer (2)
COVID-19 (2)
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Polycythemia vera (1)
Normal (1)
Not Available (1)
Bone cancer (1)
Bone osteosarcoma (1)
Colorectal cancer (1)
Coronavirus infectious disease (1)
Disease free (1)
Duchenne muscular dystrophy (1)
Endometrial carcinoma (1)
Facioscapulohumeral muscular dystrophy (1)
Kidney disease (1)
Melanoma (1)
Parkinson's disease (1)
Peripartum cardiomyopathy (1)
Prostate cancer (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (50)
Shotgun proteomics (22)
SWATH MS (11)
Bottom-up proteomics (8)
Mass spectrometry (7)
Illumina HiSeq 2000 (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (5)
Gel-based experiment (5)
Illumina Genome Analyzer II (3)
Data-independent acquisition (3)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina_660K/Illumina_670K (1)
Life Tech - Solid (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

TripleTOF 5600 (27)
NextSeq 500 (7)
Q Exactive (7)
Illumina HiSeq 4000 (4)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
SYNAPT G2-Si (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
LTQ Orbitrap Elite (2)
Q Exactive HF-X (2)
Q Exactive Plus (2)
D1000 ScreenTape Analysis, Qubit Fluorometer. (1)
Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq X (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
Illumina HiSeq 3000 (1)
Instrument (1)
LTQ Orbitrap (1)
Orbitrap Eclipse (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
QTRAP 6500 (1)
SolariX (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (46)
2012 (37)
2014 (36)
2015 (35)
2010 (24)
2011 (23)
2020 (18)
2023 (14)
2021 (13)
2016 (13)
2022 (11)
2008 (11)
2009 (8)
2025 (8)
2024 (7)
2026 (6)
2019 (6)
2007 (6)
2018 (4)
2005 (2)
2017 (2)
2006 (1)
2004 (1)

UNIPROT ID/AC

35KD_MYCTU (1)
3BHS_MYCTU (1)
3MG1_ECOLI (1)
3MGH_MYCTU (1)
3PASE_ECOLI (1)
5DNU_ECOLI (1)
6PGD_ECOLI (1)
6PGL_ECOLI (1)
6PGL_MYCTU (1)
83332.Rv1180 (1)
A2MG_ECOLI (1)
A85A_MYCTU (1)
A85B_MYCTU (1)
A85C_MYCTU (1)
AAAT_ECOLI (1)
AAC2_MYCTU (1)
AAER_ECOLI (1)
AAS_ECOLI (1)
AAT_ECOLI (1)
AAT_MYCTU (1)
ABC1_MYCTU (1)
ACCA_ECOLI (1)
ACCC_ECOLI (1)
ACCD_ECOLI (1)
ACDC_MYCTU (1)
ACDH_MYCTU (1)
ACDP_MYCTU (1)
ACEA_ECOLI (1)
ACEA_MYCTU (1)
ACFD_ECOLI (1)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (6)
ENSG00000247315 (5)
ENSG00000229353 (4)
ENSG00000204131 (1)

CHEBI ID

CHEBI:15354 (6)
CHEBI:17750 (6)
CHEBI:25094 (6)
CHEBI:32816 (6)
CHEBI:15356 (5)
CHEBI:15428 (5)
CHEBI:15676 (5)
CHEBI:16040 (5)
CHEBI:16235 (5)
CHEBI:16335 (5)
CHEBI:16449 (5)
CHEBI:16610 (5)
CHEBI:16704 (5)
CHEBI:16750 (5)
CHEBI:16811 (5)
CHEBI:17015 (5)
CHEBI:17234 (5)
CHEBI:17368 (5)
CHEBI:17562 (5)
CHEBI:17596 (5)
CHEBI:17822 (5)
CHEBI:18186 (5)
CHEBI:18237 (5)
CHEBI:18257 (5)
CHEBI:22653 (5)
CHEBI:24898 (5)
CHEBI:25017 (5)
CHEBI:26271 (5)
CHEBI:26986 (5)
CHEBI:27266 (5)

Metabolite Name

2-hydroxyglutarate (4)
Spermidine (4)
1-linoleoyl-GPC (18:2) (3)
1-linoleoyl-GPE (18:2)* (3)
1-methyladenine (3)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2)* (3)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (3)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (3)
1-palmitoyl-GPC (16:0) (3)
1-palmitoyl-GPE (16:0) (3)
2'-O-methyluridine (3)
2'-deoxyguanosine (3)
2-aminoadipate (3)
3-hydroxydecanoate (3)
3-methyl-2-oxovalerate (3)
3-methylhistidine (3)
3-phosphoglycerate (3)
4-guanidinobutanoate (3)
4-imidazoleacetate (3)
4-methyl-2-oxopentanoate (3)
5-oxoproline (3)
Betaine (3)
Choline (3)
Hypoxanthine (3)
N-acetylalanine (3)
N-acetylglucosamine/N-acetylgalactosamine (3)
N-acetylglutamate (3)
N-acetylglutamine (3)
N-acetylmethionine (3)
N-acetylserine (3)

First Public Date

2025 (1)
2016 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)
Physiologically based pharmacokinetic model (1)

Lab affiliation

Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
ETH Zurich Institute of Molecular Systems Biology (2)
Institute for Systems Biology, Seattle, WA, USA (2)
University of Missouri-Columbia (2)
Astbury Centre for Structural Molecular Biology and School of Molecular and Cellulat Biology, University of Leeds (1)
Barts Cancer Institute (1)
Boston University (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Cancer Research UK Scotland Institute (Formerly the Cancer Research UK Beatson Institute) Garscube Estate Switchback Road Bearsden Glasgow, G61 1BD (1)
Cardiac Proteomics & Systems Biology Group, Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
Centre for Proteome Research Institute of Integrative Biology University of Liverpool Biosciences Building Crown Street Liverpool L69 7ZB UK (1)
Centre for Proteome Research University of Liverpool Liverpool L69 7ZB (1)
Charite- Universitaetsmedizin Berlin, 10117 Berlin, Germany (1)
Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA (1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 | 04318 Leipzig (1)
Department of Biological Sciences, University of Manitoba, Canada (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Clinical Biochemistry, Odense University Hospital, Odense, Denmark (1)
Department of Infection Biology Institute of Infection and Global Health University of Liverpool (1)
Department of Medicine, Department of Pathology, Microbiology and Immunology Vanderbilt University School of Medicine; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG), Quantitative & Computational Biosciences (QCBio), University of California, Los Angeles, LA, USA (1)
Department of Pathology and Cancer Center, Stony Brook University, Stony Brook, NY 11794 (1)
Director of Women’s Health Research Women’s Service Line Inova Health System (1)
Division of Cancer Sciences, University of Manchester, School of Medical Sciences, Faculty of Biology, Medicine and Health, 5th Floor Research, St Mary’s Hospital, Oxford Road, Manchester M13 9PL. (1)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA (1)
Functional Proteomics, ICR (1)
Head of Proteomics Research Institute for Systems Biology 401 Terry Ave N, Seattle, WA 98109, USA (1)
Head of Proteomics Research, Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA (1)

IsPrivate

False (2)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (130)
RNA-seq of coding RNA (27)
Proteomic profiling by array (18)
ChIP-seq (15)
Unknown experiment type (5)
Genotyping by array (5)
Comparative genomic hybridization by array (5)
RNA-seq of coding RNA from single cells (5)
High-throughput sequencing (3)
ChIP-chip by tiling array (2)
Other (2)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (537)
2021 (513)
2023 (446)
2025 (435)
2024 (414)
2020 (389)
2019 (325)
2018 (300)
2015 (255)
2016 (241)
2017 (218)
2014 (190)
2013 (177)
2012 (156)
2011 (131)
2010 (110)
2009 (54)
2026 (48)
2008 (41)
2007 (24)
2006 (11)
2003 (7)
2005 (5)
2002 (5)
2004 (4)
1998 (4)
2001 (3)
1999 (2)
2000 (1)

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Metabolomics analysis highlights Yashtimadhu (Glycyrrhiza glabra L.) mediated neuroprotection in a rotenone-induced cellular model of Parkinsons disease

In the present study we carried out global and targeted metabolomics of differentiated IMR32 cells to study the neuroprotective mechanism of Yashtimadhu (Glycyrrhiza glabra L.) in rotenone induced cellular model of parkinsons disease. Our mass spectrometry data highlighted 2403 and 2934 aligned met...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-08-31 | MSV000088036 | MassIVE

LInterrogans_1D-LC

L. interrogans 1D-LC

ORGANISM(S): Leptospira Interrogans

2011-12-31 | PAe004095 | PeptideAtlas

LInterrogans_2D-OGE

L. interrogans 2D-OGE

ORGANISM(S): Leptospira Interrogans

2011-12-31 | PAe004094 | PeptideAtlas

A genetically encoded fluorescent biosensor for extracellular L-lactate.

Not available

S-EPMC8648760 | biostudies-literature

PROTOCOL: Gender transformative approaches in agriculture for women's empowerment: A systematic review

Not available

S-EPMC9270661 | biostudies-literature

PROTOCOL: Education and Covid-19: An evidence and gap map.

Not available

S-EPMC10024917 | biostudies-literature

Intraspecific variation in the Populus balsamifera drought transcriptome

Drought is a major limitation to the growth and productivity of trees in the ecologically and economically important genus Populus. The ability of Populus trees to contend with drought is a function of the responsiveness of their genome to this environmental insult, involving reconfiguration of the ...

ORGANISM(S): Populus balsamifera

2010-12-31 | E-GEOD-21171 | biostudies-arrayexpress

The methodological and reporting characteristics of Campbell reviews: A systematic review.

Not available

S-EPMC8356304 | biostudies-literature

Enantiomeric Recognition of d- and l-Lactate by CEST with the Aid of a Paramagnetic Shift Reagent.

Not available

S-EPMC5796655 | biostudies-literature

Duck TRIM27-L enhances MAVS signaling and is absent in chickens and turkeys.

Not available

S-EPMC4577026 | biostudies-literature