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Unknown (39984)
Genomics (3652)
Transcriptomics (2470)
Proteomics (1660)
Other (106)
Metabolomics (90)
Models (48)
Methylation profiling (48)
Clinical (43)
Genomic (26)
Multiomics (3)

Organisms

Homo sapiens (1684)
Mus musculus (663)
Rattus norvegicus (130)
Arabidopsis thaliana (76)
Danio rerio (48)
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Gallus gallus (33)
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Solanum tuberosum (6)
Glycine max (6)
Mycobacterium tuberculosis (5)
Apis mellifera (5)
Coturnix japonica (3)
Rattus (1)
Mammalia (1)

Organisms

Homo sapiens (991)
Mus musculus (437)
Rattus norvegicus (75)
Arabidopsis thaliana (43)
Drosophila melanogaster (28)
Bos taurus (25)
Gallus gallus (19)
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Caenorhabditis elegans (16)
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Saccharomyces cerevisiae (12)
Macaca mulatta (9)
Plasmodium falciparum (8)
Actinobacillus pleuropneumoniae (7)
Clostridioides difficile (7)
Ovis aries (7)
Zea mays (7)
Oryza sativa Japonica Group (7)
unidentified (7)
Lacticaseibacillus rhamnosus (6)
Canis lupus familiaris (6)
Escherichia coli (6)
Solanum tuberosum (6)
Xenopus laevis (5)
Lysinibacillus irui (5)
Glycine max (5)
Candida albicans (5)
Vitis vinifera (5)
Junonia coenia (4)

Repository

ENA (3187)
geo (1928)
pride (1184)
biostudies-arrayexpress (1069)
MassIVE (162)
PeptideAtlas (147)
EGA (86)
iProX (82)
MetaboLights (76)
jPOST (46)
BioModels (43)
dbGaP (26)
PanoramaPublic (24)
GNPS (14)
GPMDB (12)
PAXDB (8)
Cell Collective (4)
ExpressionAtlas (2)
NODE (2)
EVA (1)
PMR (1)

Tissue

Cell culture (204)
Digestive System (95)
Blood (74)
Epithelial cell (61)
Blood plasma (60)
Brain (53)
Blood serum (42)
Plant cell (34)
Liver (28)
Lung (27)
Others (26)
Whole body (25)
Leaf (24)
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Kidney (22)
B cell (20)
T cell (20)
Permanent cell line cell (17)
Blood cell (16)
Colon (16)
Heart (15)
Macrophage (13)
Stem cell (13)
Embryo (12)
Saliva (12)
Urine (12)
Plasma Non-glyco (10)
Platelet (4)
Pancreas (1)
Brain (1)

Disease

Colorectal Neoplasms (25)
Not Available (12)
Normal (6)
Glioblastoma (4)
Porphyria NOS (2)
Carcinoma (2)
Colonic Neoplasms (2)
Metastatic colorectal cancer (2)
Astrocytomas (1)
Early onset preeclampsia (1)
Moderate (1)
Inflammatory bowel disease (1)
IBDV infected (1)
Giant Cell Glioblastoma (1)
Temporal lobe epilepsy (1)
Renal cell carcinoma (1)
Extranodal NK/T cell lymphoma, nasal type (1)
None (1)
Heart Diseases (1)
Obesity (1)
Histologically or cytologically confirmed UICC stage IV carcinoma of colon or rectum with metastasis (metastatic colorectal cancer) with need for treatment due to progression (1)
Adenomatous Polyposis Coli (1)
Liver Neoplasms (1)
Inflammatory Bowel Diseases (1)
Pancreatic Neoplasms (1)
Malignant neoplasm of colon (1)
Ovarian Neoplasms (1)
Colorectal cancer (1)
Rectal Neoplasms (1)
Neoplasms (1)

Technology Type

Mass Spectrometry (1184)
Shotgun proteomics (640)
Bottom-up proteomics (179)
Affinity purification coupled with mass spectrometry proteomics (129)
Data-dependent acquisition (109)
Top-down proteomics (90)
Gel-based experiment (78)
Mass spectrometry (60)
Chemical cross-linking coupled with mass spectrometry proteomics (50)
Data-independent acquisition (45)
SWATH MS (43)
SRM/MRM (24)
Mass spectrometry assay (13)
HDMSE (7)
MSE (5)
Illumina HiSeq 2000 (4)
NMR spectroscopy (4)
Affinity proteomics (4)
DiaPASEF (4)
Proteogenomics (3)
Immunopeptidomics (2)
Affymetrix Axiom Genome-Wide ASI 1 Array (1)
ILLUMINA, Illumina HiSeq 2500 (1)
HumanOmni1 Quad BeadChip (1)
ILLUMINA, Illumina MiSeq (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5M-8v1-1_B (1)
Illumina HiSeq 2000, Ion Torrent PGM (1)
AB SOLiD System 3.0 (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Illumina MiSeq (1)

Instrument Platform

Illumina NovaSeq 6000 (22)
Illumina HiSeq 4000 (20)
NextSeq 500 (11)
Illumina HiSeq 2000 (10)
Illumina HiSeq 2500 (7)
Agilent High resolution C scanner (4)
Illumina Genome Analyzer IIx (3)
Illumina HiSeq 1500 (3)
Beadarray reader (2)
428 [Affymetrix] (2)
Agilent G2505B scanner (2)
NA (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
In-house Perl scripts (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
See Description (1)
See Desciption (1)
Manual labeling (1)
Manual extraction (1)
Clinical procedure using endoscopic equimpent (1)
Affymetrix GeneChip Scanner (1)
Illumina protocol (1)
Not applicable (1)
Affymetrix GeneChip Scanner 3000 (1)
AB SOLiD 4 System (1)
BAS-1800 [FUJIFILM] (1)

Publication Date

2025 (437)
2014 (377)
2022 (366)
2023 (328)
2024 (320)
2026 (283)
2021 (277)
2015 (262)
2020 (251)
2010 (220)
2013 (200)
2018 (191)
2019 (186)
2012 (178)
2011 (175)
2017 (172)
2016 (161)
2009 (111)
2008 (98)
2007 (70)
2006 (24)
2004 (14)
2005 (13)
2003 (2)

UNIPROT ID/AC

272620.KPN_04357 (3)
5DNU_KLEP7 (3)
6PGL_KLEP7 (3)
A6T4E2_KLEP7 (3)
A6T4E4_KLEP7 (3)
A6T4E8_KLEP7 (3)
A6T4E9_KLEP7 (3)
A6T4F0_KLEP7 (3)
A6T4F7_KLEP7 (3)
A6T4F8_KLEP7 (3)
A6T4F9_KLEP7 (3)
A6T4G0_KLEP7 (3)
A6T4G2_KLEP7 (3)
A6T4H9_KLEP7 (3)
A6T4I0_KLEP7 (3)
A6T4I1_KLEP7 (3)
A6T4I2_KLEP7 (3)
A6T4I4_KLEP7 (3)
A6T4I6_KLEP7 (3)
A6T4I8_KLEP7 (3)
A6T4I9_KLEP7 (3)
A6T4J0_KLEP7 (3)
A6T4J1_KLEP7 (3)
A6T4J2_KLEP7 (3)
A6T4J5_KLEP7 (3)
A6T4K4_KLEP7 (3)
A6T4K5_KLEP7 (3)
A6T4K6_KLEP7 (3)
A6T4K7_KLEP7 (3)
A6T4L8_KLEP7 (3)

ENSEMBL ID

ENSG00000170477 (128)
ENSG00000229353 (58)
ENSG00000147251 (31)
ENSG00000247315 (9)
ENSG00000204131 (4)
ENSG00000176092 (2)
ENSMUSG00000098557 (2)
ENSMUSP00000141097 (2)
ENSMUSP00000141542 (2)

CHEBI ID

CHEBI:17822 (11)
CHEBI:16710 (10)
CHEBI:17050 (10)
CHEBI:16761 (10)
CHEBI:25523 (8)
CHEBI:16474 (8)
CHEBI:16526 (8)
CHEBI:17992 (7)
CHEBI:15721 (7)
CHEBI:43474 (6)
CHEBI:15379 (6)
CHEBI:17659 (6)
CHEBI:17363 (5)
CHEBI:15422 (5)
CHEBI:15965 (3)
CHEBI:17138 (3)
CHEBI:22902 (2)
CHEBI:17969 (2)
CHEBI:15378 (2)
CHEBI:15713 (2)
CHEBI:16905 (2)
CHEBI:16108 (2)
CHEBI:15946 (2)
CHEBI:38068 (1)
CHEBI:50183 (1)
CHEBI:13389 (1)
CHEBI:52217 (1)
CHEBI:28017 (1)
CHEBI:35222 (1)
CHEBI:15279 (1)

Metabolite Name

Uridine (14)
Adenine (13)
Citric acid (12)
Taurine (11)
Isoleucine (10)
Inosine (10)
Hypoxanthine (10)
Glycine (9)
Valine (9)
Succinic acid (9)
Adenosine (9)
Palmitic acid (9)
Guanosine (9)
Leucine (8)
Kynurenic acid (8)
Fumaric acid (8)
Riboflavin (8)
Phenylalanine (8)
Azelaic acid (8)
Creatinine (8)
Creatine (8)
Tryptophan (8)
Pyruvic acid (7)
Phthalic acid (7)
Betaine (7)
Pyroglutamic acid (7)
Ornithine (7)
Choline (7)
Docosahexaenoic acid (7)
Arachidonic acid (7)

First Public Date

2014 (487)
2025 (398)
2026 (331)
2024 (315)
2023 (245)
2022 (222)
2021 (215)
2020 (201)
2019 (155)
2017 (146)
2018 (143)
2013 (128)
2015 (118)
2016 (79)
2011 (2)
2012 (1)
2010 (1)

Modelling Approach

Constraint-based model (14)
Ordinary differential equation model (13)
Computational model (7)
Other (3)
Physiologically based pharmacokinetic model (2)
Deep learning (1)
Machine learning (1)
Boolean model (1)
Logical model (1)

Study status

Completed (15)
Recruiting (9)
Terminated (7)
Not provided (7)
Withdrawn (2)
Not yet recruiting (2)
Active, not recruiting (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
iBET – Instituto de Biologia Experimental e Tecnológica, Av. da República, Oeiras, 2780-157, Portugal (14)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences • Beijing, Beijing Institute of Lifeomics, Beijing, China (7)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (6)
Moffitt Cancer Center Tampa, FL, USA (6)
Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Munich, Germany (5)
University of Copenhagen Department of Biomedical Sciences Blegdamsvej 3B København N, DK-2200 (5)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (4)
Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan. (4)
Professor at Department of Pharmacy, Drug Delivery, Uppsala University (4)
Proteomics, Metabolomics & Mass Spectrometry Laboratory, Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, Piazzale Enrico Fermi 1, 80055 Portici (NA), Italy (4)
University of Missouri (4)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia. (3)
EPFL (3)
Functional proteomics group; Molecular Biomedicine department; CIB-CSIC (3)
IRIC-Université de Montréal (3)
Laboratory of Malaria and Vector Research, NIAID, NIH (3)
Molecular and Cell Biology Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Rd, La Jolla, CA 92037 (3)
Molecular and Cellular Biology, University of Guelph, Canada (3)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (3)
1. Wellcome Trust Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, UK 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Germany (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (2)
Applied Proteomics Laboratory, Department of Biology, Maynooth University, Ireland. (2)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht 3584 CH, the Netherlands and Netherlands Proteomics Center, Padualaan 8, Utrecht 3584 CH, the Netherlands (2)
Chang Gung University, Taiwan (2)
China Pharmaceutical University (2)
Department Ecotoxicogenomics, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Schmallenberg. (2)
Department of Biochemistry and Molecular Biology Indiana University School of Medicine Indianapolis, IN (2)

Keyword

Bevacizumab (7)
Capecitabine (5)
Oxaliplatin (5)
Leucovorin (4)
Fluorouracil (4)
Panitumumab (3)
Regorafenib (2)
Paclitaxel (2)
Colonoscopy (2)
Inflammation Obesity (1)
Remicade (1)
CGD Infection (1)
Chorionic Granulomatous Disease (1)
CGD (1)
DuoBody- CD40xCD137 (1)
6-diazo-5-oxo-l-Norleucine (DON) (1)
PEGylated Pseudomonas 7A glutaminase-asparaginase (1)
ZALTRAP (1)
Intestinal NET (1)
Somatostatin analogues (1)
Tryptophan hydroxylase inhibitor (1)
Polydextrose (1)
Non-digestible carbohydrate (1)
LiverMultiScan (1)
Multiparameter MRI (1)
Functional liver remnant (1)
Portal vein embolisation (1)
Preoperative liver function (1)
Postoperative liver failure (1)
Advanced colorectal carcinoma (1)

IsPrivate

False (43)

Model Flag

Non Kinetic (4)

Submitter Keywords

Ersilia (9)
Machine Learning Model (9)
FAIR-AIML (4)
TransQST (2)
FROG (2)
Not Peer Reviewed (2)
COVID-19 (1)

Classification

bacteria (81)
fungi (12)
protozoa (9)
viruses (8)
helminths (5)

Modification

4x(15)N labeled L-arginine (7)
2x(15)N labeled L-lysine (5)
15.994915 (4)
42.010565 (4)
4-tetrahydrothiazine-3-carboxylic acid (2)
57.021464 (2)
N6 (2)
-17.026549 (1)
3'' (1)
4 (1)
71.037114 (1)
Not available (1)

Study type

Transcription profiling by array (647)
RNA-seq of coding RNA (150)
RNA-seq of non coding RNA (80)
Comparative genomic hybridization by array (36)
Unknown experiment type (28)
Other (18)
ChIP-seq (16)
Methylation profiling by array (15)
RNA-seq of coding RNA from single cells (10)
Transcription profiling by SAGE (8)
Genotyping by array (7)
ChIP-chip by tiling array (5)
Animal - One-color microarray (4)
ChIP-chip by array (4)
Transcription profiling by RT-PCR (4)
DNA-seq (4)
Transcription profiling by tiling array (3)
RNA-seq of total RNA (3)
Transcription profiling by MPSS (2)
Human - Methylation microarray (2)
Human - High-throughput sequencing (2)
Human - One-color microarray (2)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
MicroRNA profiling by array (2)
Proteomic profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Cell line - Single-cell sequencing (1)
Human - Two-color microarray (1)
High-throughput sequencing (1)

Release Date

2022 (4862)
2025 (4444)
2021 (4389)
2023 (4368)
2024 (3569)
2020 (3391)
2019 (2283)
2018 (2113)
2017 (1834)
2016 (1649)
2015 (1480)
2014 (1317)
2013 (1001)
2012 (786)
2026 (676)
2010 (672)
2011 (669)
2009 (461)
2008 (354)
2007 (225)
2006 (151)
2005 (103)
2004 (72)
2003 (50)
2002 (46)
2001 (34)
2000 (19)
1999 (16)
1998 (13)
1997 (2)

Location

United States (9)
Spain (8)
Italy (7)
Germany (5)
United Kingdom (4)
France (4)
South Korea (3)
Israel (2)
Belgium (2)
Netherlands (2)
Moldova (1)
Iran (1)
Georgia (1)
Taiwan (1)
Denmark (1)
Turkey (1)
Poland (1)
Canada (1)

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1H NMR metabolomic and transcriptomic analyses reveal urinary metabolites as biomarker candidates in response to protein undernutrition in adult rats

BACKGROUND: Protein undernutrition is prevalent mainly among elderly people, and it could develop diseases such as sarcopenia. Urinary metabolites may become biomarkers reflecting protein undernutrition, but this has been insufficiently investigated.

OBJECTIVE:

2021-05-27 | MTBLS1452 | MetaboLights

Prototype LNP-mRNA vaccine candidates [SC_RNAseq]

PRJNA853803 | ENA

New Probiotic Candidates Isolated from JinHua Pig Intestinal Mucosa

New Probiotic Candidates Isolated from JinHua Pig Intestinal Mucosa Assembly

PRJNA826263 | ENA

Identification of Drug Candidates Rescuing SARS-CoV-2 Infection Induced Dopaminergic Neuron Senescence

PRJNA658985 | ENA

The identification of onchocerciasis biomarker candidates directly in human serum and urine

Onchocerca volvulus, the causative agent of onchocerciasis, infects over 20 million people and can cause severe dermatitis and ocular conditions including blindness. Current mass drug administration treatments do not kill female O. volvulus worms, and common diagnostic tests cannot reliably assess t...

ORGANISM(S): Homo Sapiens Onchocerca Volvulus

2022-11-22 | PXD033659 |

miRNA profiling of putative biomarker candidates in Mycobacterium avium subsp. paratuberculosis-infected cattle

PRJNA699634 | ENA

Comparing the transcriptomic profiles of anti-viral candidates knockout cells

PRJNA1032949 | ENA

Transcription profiling of human quadriceps femoris muscle following statin treatment to identify potential biomarker candidates related to statin-induced changes in muscle metabolism

The experiment is part of a study using systems biology approach to analyze muscle gene expression and UPLC-MS based plasma lipidomics profiling data to illuminate relevant biological pathways and to find potential biomarker candidates related to statin-induced changes in muscle metabolism.

ORGANISM(S): Homo sapiens

2007-03-01 | E-TABM-116 | biostudies-arrayexpress

Functional precision medicine identifies new therapeutic candidates for medulloblastoma

PRJNA635569 | ENA

Expression data of candidates for prostate cancer active surveillance

PRJNA489796 | ENA