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UnknownComparative population genomics reveals convergent and divergent selection in the apricot-peach-plum-mei complex.
Not available
S-EPMC11179850 | biostudies-literature
GenomicsMeiotic recombination cold spots in chromosomal cohesion sites [ChIP-Seq]
Meiotic chromosome architecture called M-bM-^@M-^\axis-loop structuresM-bM-^@M-^] and histone modifications have been demonstrated to regulate the Spo11-dependent formation of DNA double-strand breaks (DSBs) that trigger meiotic recombination. Using genome-wide chromatin immunoprecipitation (ChIP) a...
ORGANISM(S): Saccharomyces cerevisiae 
2014-03-31 | E-GEOD-52862 | biostudies-arrayexpress
TranscriptomicsMeiotic recombination cold spots in chromosomal cohesion sites [ChIP-chip]
Meiotic chromosome architecture called M-bM-^@M-^\axis-loop structuresM-bM-^@M-^] and histone modifications have been demonstrated to regulate the Spo11-dependent formation of DNA double-strand breaks (DSBs) that trigger meiotic recombination. Using genome-wide chromatin immunoprecipitation (ChIP) a...
ORGANISM(S): Schizosaccharomyces pombe 
2014-03-31 | E-GEOD-52858 | biostudies-arrayexpress
TranscriptomicsMeiotic DNA double strand breaks in the yeast Saccaromyces cerevisiae
DNA double-strand breaks (DSBs) initiate meiotic recombination. Past DSB-mapping studies have used rad50S or sae2? mutants, which are defective in break processing, to accumulate DSBs, and report large (= 50 kb) “DSB-hot” regions that are separated by “DSB-cold” domains of similar size. Substantial ...
ORGANISM(S): Saccharomyces cerevisiae 
2007-12-30 | E-GEOD-8981 | biostudies-arrayexpress
TranscriptomicsRec8 guides canonical Spo11 distribution along yeast meiotic chromosomes
Spo11-mediated DNA double strand breaks (DSBs) that initiate meiotic recombination are temporally and spatially controlled. The meiotic cohesin Rec8 has been implicated in regulating DSB formation, but little is known about the features of their interplay. To shed light on this point, we investigate...
ORGANISM(S): Saccharomyces cerevisiae 
2010-05-18 | E-GEOD-8422 | biostudies-arrayexpress
UnknownUsing a Battery of Bioassays to Assess the Toxicity of Wastewater Treatment Plant Effluents in Industrial Parks.
Not available
S-EPMC10457805 | biostudies-literature
no omics definedTranscription profiling of Pseudomonas putida mt-2 with TOL plasmid in response to pWW0 m-xylene, o-xylene, 3MBA and heat shock
A sub-genomic array of structural and regulatory genes of the TOL plasmid pWW0 of Pseudomonas putida mt-2 has been taiolored for inferring the genetic network of m-xylene metabolism through expression profiling of xyl genes. To this end we visualized the response to m-xylene, o-xylene, 3MBA and to a...
ORGANISM(S): Pseudomonas putida 
2006-01-01 | E-MEXP-305 | biostudies-arrayexpress
TranscriptomicsGlobal changes in gene expression during sub-zero acclimation of three Arabidopsis thaliana accessions
During cold acclimation plants increase their freezing tolerance in response to low non-freezing temperatures. This is accompanied by many physiological, biochemical and molecular changes that have been extensively investigated. In addition, many cold acclimated plants become more freezing tolerant ...
ORGANISM(S): Arabidopsis thaliana 
2014-03-12 | E-GEOD-55835 | biostudies-arrayexpress
TranscriptomicsCharacterization of the transcriptomes of genetically diverse Listeria monocytogenes exposed to hyperosmotic and low temperature conditions
A screening process was used to determine hyperosmotic as well as cold stress tolerance of a diverse set of Listeria monocytogenes strains and was based on the capacity to grow at sub lethal levels of NaCl and 4M-BM-0C. Analysis of gene expression in cells adapted to cold and hyperosmotic stress rev...
ORGANISM(S): Listeria monocytogenes 
2013-05-04 | E-GEOD-46612 | biostudies-arrayexpress
ProteomicsEffective Enrichment Strategy Using Boronic Acid Functionalized Mesoporous Graphene Silica Composites for Intact Glycopeptide Analysis in Human Serum
The heterogeneity and low abundance of protein glycosylation present challenging barriers to the analysis of intact glycopeptides, which is key to comprehensively understanding the role of glycosylation in an organism. Efficient and specific enrichment of intact glycopeptides could help greatly with...
ORGANISM(S): Human 
2021-04-28 | MSV000087324 | MassIVE
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