Capra hircus - OmicsDI

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Genomics (817)
Transcriptomics (466)
Unknown (250)
Proteomics (149)
Metabolomics (26)
Methylation profiling (9)
Other (5)

Organisms

Capra hircus (263)
Homo sapiens (186)
Mus musculus (144)
Bos taurus (43)
Ovis aries (19)
Drosophila melanogaster (13)
Rattus norvegicus (11)
Sus scrofa (10)
Arabidopsis thaliana (7)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (6)
Gallus gallus (6)
Mesocricetus auratus (6)
Staphylococcus aureus (5)
Saccharomyces cerevisiae (5)
Schizosaccharomyces pombe (3)
Klebsiella pneumoniae (3)
Glycine max (3)
Peromyscus leucopus (3)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (2)
Shewanella oneidensis MR-1 (2)
Streptococcus pyogenes (2)
Danio rerio (2)
dust metagenome (1)
human nasopharyngeal metagenome (1)
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (1)
Rickettsia conorii str. Malish 7 (1)
Mustela putorius furo (1)
Brucella melitensis (1)
Corynebacterium pseudotuberculosis (1)
Fusobacterium nucleatum (1)

Organisms

Capra hircus (608)
goat gut metagenome (4)
Capra sibirica x Capra hircus (3)
Capra hircus cretica (3)
Streptococcus equinus (2)
Mycoplasmopsis agalactiae (2)
Streptococcus ruminicola (1)
Trypanosoma vivax (1)
milk metagenome (1)
gut metagenome (1)
Mus musculus (1)
Homo sapiens (1)

Repository

ENA (705)
biostudies-arrayexpress (430)
geo (198)
pride (51)
iProX (27)
EVA (20)
MetaboLights (19)
MassIVE (10)
MetabolomicsWorkbench (6)
jPOST (3)
NODE (2)
GNPS (1)

Tissue

Milk (7)
Skin (7)
Bone (6)
Milk (2)
Feces (2)
Blood (2)
Outer annulus fibrosus (2)
Inner annulus fibrosus (2)
Cartilage endplate (2)
Nucleus pulposus (2)
Ear (2)
Mammary gland (2)
Sperm (2)
Blood serum (2)
Fibroblast (2)
Epithelial cell (2)
Cell culture (2)
Enamel organ (1)
Metacestode (1)
Dentary tooth (1)
Respiratory mucus (1)
Rumen (1)
Hair (1)
Enamel (1)
Dental plaque (1)
Tooth enamel organ (1)
Colostrum (1)
Subcutaneous adipose tissue (1)
Tooth (1)
Tooth enamel (1)

Disease

Disease free (4)
Benign prostatic hyperplasia (2)
Mastitis (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Gliosarcoma (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Internal Carotid Artery Stenosis (NCI Metathesaurus C0340569) has DiseaseStaging Asymptomatic (1)
Carotid artery disease: ASYMPTOMATIC high-grade inner carotid artery stenosis (1)
Infected (1)
IBDV infected (1)
Head and neck squamous cell carcinoma (1)
Cancer (1)
IgG negative for EV71 and CA21 (1)
Normal (1)
Inflammation (1)

Technology Type

Mass Spectrometry (54)
Shotgun proteomics (33)
Mass spectrometry (14)
Mass spectrometry assay (5)
Gel-based experiment (5)
Data-dependent acquisition (4)
Bottom-up proteomics (4)
NMR (3)
ESI (3)
SWATH MS (3)
Data-independent acquisition (2)
SRM/MRM (2)
Mass spectrometry imaging (1)

Instrument Platform

Illumina HiSeq 2000 (12)
Illumina NovaSeq 6000 (8)
- (8)
Illumina HiSeq 2500 (7)
NextSeq 500 (5)
LTQ Orbitrap Elite (4)
Q Exactive (4)
Illumina Genome Analyzer IIx (3)
NextSeq 2000 (3)
Illumina MiSeq (3)
Unspecified (3)
Other (2)
Illumina NovaSeq X (2)
Illumina HiSeq 4000 (2)
Illumina (2)
6560 Q-TOF LC/MS (2)
Tapestation (1)
Genetix aQuire (1)
Not applicable (1)
AB SOLiD System 3.0 (1)
HP GeneArray [Affymetrix/HP] (1)
Illumina Genome Analyzer II (1)
TruSeq (Illumina, Novogene, Genomic Centre Cambridge, CB4 0FW, UK.) (1)
NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer (1)
Histopaque-1077,FACSAria Fusion Sorter,Flow Cytometer (1)
HiSeq X Ten (1)
ABI PRISM 310 Genetic Analyzer (1)
ABI 3500 Genetic Analyzer (1)
AB 3730xl (1)
LTQ Orbitrap Velos (1)

Publication Date

2013 (79)
2010 (71)
2014 (52)
2022 (51)
2012 (50)
2015 (47)
2023 (46)
2025 (40)
2011 (37)
2024 (35)
2021 (34)
2016 (29)
2008 (29)
2026 (27)
2020 (27)
2017 (21)
2019 (20)
2018 (18)
2009 (15)
2007 (7)
2005 (4)
2006 (3)
2004 (2)
2002 (1)

CHEBI ID

CHEBI:180593 (3)
CHEBI:7027 (3)
CHEBI:74767 (3)
CHEBI:90355 (3)
CHEBI:21363 (3)
CHEBI:7466 (3)
CHEBI:63795 (3)
CHEBI:28918 (3)
CHEBI:168507 (3)
CHEBI:69081 (3)
CHEBI:71464 (3)
CHEBI:82846 (3)
CHEBI:28792 (3)
CHEBI:28997 (3)
CHEBI:17061 (3)
CHEBI:70979 (3)
CHEBI:42504 (3)
CHEBI:70958 (3)
CHEBI:61058 (3)
CHEBI:28822 (3)
CHEBI:70989 (3)
CHEBI:40410 (3)
CHEBI:20794 (3)
CHEBI:17033 (3)
CHEBI:44811 (3)
CHEBI:19702 (3)
CHEBI:72998 (3)
CHEBI:72802 (3)
CHEBI:30805 (3)
CHEBI:64549 (3)

Metabolite Name

Hypoxanthine (7)
Betaine (6)
Threonine (6)
Cytidine (6)
Creatine (6)
Uracil (5)
Cinnamoylglycine (5)
Enterolactone (5)
Carnosine (5)
Ornithine (5)
Serotonin (5)
Undecanedioic acid (5)
Biliverdin (5)
Methionine (5)
Taurine (5)
Taurocholic acid (5)
Glycocholic acid (5)
Glycoursodeoxycholic acid (5)
Tyramine (5)
Adenosine (5)
Cytosine (5)
Suberic acid (5)
Azelaic acid (5)
Xanthine (5)
Guanosine (5)
Creatinine (5)
Stearamide (5)
Hippuric acid (5)
Inosine (5)
Cyclocytidine (4)

First Public Date

2024 (120)
2025 (103)
2023 (81)
2021 (64)
2022 (61)
2026 (51)
2020 (42)
2017 (37)
2019 (33)
2016 (31)
2018 (29)
2014 (23)
2013 (17)
2015 (13)

Classification

bacteria (5)
protozoa (1)

Study type

Transcription profiling by array (239)
Proteomic profiling by array (43)
ChIP-seq (41)
RNA-seq of coding RNA (35)
Other (17)
Comparative genomic hybridization by array (16)
ChIP-chip by tiling array (9)
Antigen profiling (6)
RNA-seq of non coding RNA (6)
Transcription profiling by tiling array (3)
ATAC-seq (3)
Human - High-throughput sequencing (2)
Unknown experiment type (1)
Human - One-color microarray (1)
ChIP-chip by array (1)
Genotyping by array (1)
CLIP-seq (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
RIP-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

2013 (84)
2010 (73)
2012 (56)
2014 (55)
2015 (54)
2023 (36)
2022 (36)
2011 (36)
2016 (30)
2008 (27)
2021 (26)
2025 (25)
2020 (23)
2024 (22)
2017 (21)
2018 (20)
2019 (19)
2009 (13)
2007 (7)
2026 (5)
2005 (5)
2006 (4)
2004 (1)
2002 (1)
1998 (1)

Lab affiliation

Head of Scientific Archeology Unit, Weizmann Institute of Science (2)
Department of Archaeology, University of York, Heslington, YO10 5DD, United Kingdom (2)
Inner Mongolia Key Laboratory Of Sheep & Goat Genetics Breeding and Reproduction, Hohhot,China. (2)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
CNRS, INSERM, Univ. Lille, CHU Lille, Institut Pasteur de Lille, Centre d’Infection et d’Immunité de Lille, 59000 Lille, France (1)
Bioengineering (1)
Associate Professor Departamento de Bioquímica y Biología Molecular, Universidad de Córdoba, Campus de Excelencia Internacional CeiA3, Córdoba, Spain. (1)
Proteins & Metabolites Team, Lincoln Research Centre, AgResearch Limited, Lincoln, New Zealand (1)
The Art Institute of Chicago, Conservation and Science, Chicago, United States (1)
AnimalS health Territories Risks Ecosystems (ASTRE Unit CIRAD), France (1)
School of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India (1)
School of Medical Science and Technology, Department of Biotechnology, Indian Institute of Technology Kharagur, Kharagpur 721302, India (1)
State Key Laboratory of Veterinary Etiological Biology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu, PR China (1)
Anhui Agricultural University,China (1)
University of Namur - Belgium (1)
Veterinary Faculty, University of Murcia, Department of Animal Production (1)
Section for EvoGenomics, GLOBE Institute, University of Copenhagen, Denmark (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432,Ås, Norway (1)
Department of Animal Reproduction, Spanish National Institute for Agricultural and Food Research and Technology (INIA), Avda. Puerta de Hierro km 5.9, 28040 Madrid, Spain. (1)
Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences (1)
School of Life Sciences, Inner Mongolia University (1)
Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350, Copenhagen, Denmark (1)
Laura Restelli, Dipartimento di Scienze Veterinarie per la Salute, la Produzione Animale e la Sicurezza Alimentare – Università degli Studi di Milano, Via Celoria 10, 20133 Milan, Italy. Phone: +39 02 50318100 (1)
Forensic Science Laboratory, Chemcentre, Western Australia (1)
ICAR-Central Institute for Research on Goats, Makhdoom, Farah, Mathura-281122 (1)
Massey University (1)
Institute of Dairy Science, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; (1)
INRA, UMR 1313 Unité Génétique Animale animale et Biologie Intégrative (1)
VIB-Ghent University (1)
Proteomics Unit Spanish National Cancer Research Centre (CNIO) Melchor Férnandez Almagro, 3. 28029 Madrid. SPAIN (1)

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Transcriptome sequencing of Capra hircus for different tissues.

The domestic goat, Capra hircus (2n=60), is one of the most important domestic livestock species in the world. Here we report its high quality reference genome generated by combining Illumina short reads sequencing and a new automated and high throughput whole genome mapping system based on the opti...

ORGANISM(S): Capra hircus

2012-12-23 | E-GEOD-37456 | biostudies-arrayexpress

Mass spectrometric analysis of Collagen alpha-1 (II) chain from Capra hircus

Expressional alterations and post translational modifications (PTM) of type II collagen can be major cause behind osteo and rheumatoid arthritis. PTM of type II collagen α1 chain (COL2A1) such as hydroxylation of proline (P), lysine and glycosylation of hydroxylysine can act as epitopes resulting CO...

ORGANISM(S): Capra hircus (Goat)

2019-05-06 | PXD012911 | Pride