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TranscriptomicsThe role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger
Fungi are an important source of enzymes for saccharification of plant polysaccharides and production of biofuels. Understanding of the regulation and induction of expression of genes encoding these enzymes is still incomplete. To explore the induction mechanism, we analysed the response of the indu...
ORGANISM(S): Aspergillus niger 
2014-08-22 | E-GEOD-57315 | biostudies-arrayexpress
GenomicsHigh-quality RNA extraction and regulation of carbohydrate active enzymes is correlated with stage of growth in anaerobic fungi
High-quality RNA extraction and regulation of carbohydrate active enzymes is correlated with stage of growth in anaerobic fungi Metagenome
PRJNA887131 | ENA
ProteomicsShotgun proteomic analysis of the Methionine oxidation of carbohydrate-active enzymes during white-rot wood decay.
Methionine oxydation level was monitored by tandem mass spectrometry for secreted proteins and intracellular proteins from the white-rot fungus Pycnoporus cinnabarinus grown on aspen wood.
ORGANISM(S): Pycnoporus <basidiomycete fungi> 
2024-11-06 | PXD046271 | Pride
Methionine oxidation Wood decay Carbohydrate-active enzymes Plant cell wall Redox proteomics Fungi 
ProteomicsApplication of carbohydrate arrays coupled with mass spectrometry to detect activity of plant-polysaccharide degradative enzymes from the fungus Aspergillus niger
Renewables-based biotechnology depends on enzymes to degrade plant lignocellulose to simple sugars that are converted to fuels or high-value products. Identification and characterization of such lignocellulose degradative enzymes could be fast-tracked by availability of an enzyme activity measuremen...
ORGANISM(S): Aspergillus niger 
2018-10-26 | PXD005699 | Pride
Cazymes Lignocellulose Aspergillus niger Plant-polysaccharide degrading enzymes 
GenomicsThe Carbohydrate-Active Enzymes (CAZymes) required for cellulose deconstruction in Cellvibrio japonicus are part of an efficient cellodextrin uptake system
The Carbohydrate-Active Enzymes (CAZymes) required for cellulose deconstruction in Cellvibrio japonicus are part of an efficient cellodextrin uptake system
PRJNA1211626 | ENA
ProteomicsDiscovery and Characterization of a Novel Carbohydrate-Active Enzyme from the Anaerobic Fungus Piromyces finnis
Dwelling in the gut of herbivores, anaerobic gut fungi (AGF) have evolved several strategies to efficiently degrade unpretreated biomass. Their genomes encode a diverse array of carbohydrate-active enzymes (CAZymes), yet exceedingly few of these enzymes have been validated. Here, we developed a pred...
ORGANISM(S): Escherichia coli 
2025-07-31 | PXD061558 | Pride
Cazymes Jbei Proteomics High-throughput screen Heterologous expression 
GenomicsTranscriptomic analysis reveals three important carbohydrate-active enzymes contributing to starch degradation of oleaginous yeast Lipomyces starkeyi
Transcriptomic analysis reveals three important carbohydrate-active enzymes contributing to starch degradation of oleaginous yeast Lipomyces starkeyi
PRJNA1154252 | ENA
TranscriptomicsComposition and expression of genes encoding carbohydrate-active enzymes in the straw-degrading mushroom Volvariella volvacea
Volvariella volvacea is one of a few commercial cultivated mushrooms mainly using straw as carbon source. In this study, the genome of V. volcacea was sequenced and assembled. A total of 286 genes encoding carbohydrate-active enzymes (CAZymes) in V. volvacea were identified and annotated. Among 15 f...
ORGANISM(S): Volvariella volvacea 
2014-12-19 | E-GEOD-43019 | biostudies-arrayexpress
UnknownThe carbohydrate-active enzymes database (CAZy) in 2013.
Not available
S-EPMC3965031 | biostudies-literature
UnknownCANDy: Automated analysis of domain architectures in carbohydrate-active enzymes.
Not available
S-EPMC11238990 | biostudies-literature
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