Carbohydrate-active enzymes

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Unknown (1379)
Genomics (257)
Transcriptomics (59)
Proteomics (50)
Metabolomics (13)
Models (2)

Organisms

Aspergillus niger (4)
Cellvibrio japonicus (4)
Vitis vinifera (3)
Arabidopsis thaliana (3)
Botrytis cinerea (3)
Bacteria (3)
Saccharomyces cerevisiae (2)
Thermomyces lanuginosus (2)
Botrytis cinerea B05.10 (2)
Streptococcus dysgalactiae subsp. equisimilis (2)
Bacteroides cellulosilyticus (2)
Dorea longicatena DSM 13814 (2)
Volvariella volvacea (2)
human gut metagenome (2)
Caldicellulosiruptor bescii DSM 6725 (2)
Triticum monococcum (1)
Sclerotinia sclerotiorum (1)
Neurospora crassa OR74A (1)
Aspergillus oryzae RIB40 (1)
Blumeria graminis (1)
Halobacterium salinarum (1)
Nicotiana benthamiana (1)
Populus trichocarpa (1)
Fervidibacter sacchari (1)
Lipomyces starkeyi NRRL Y-11557 (1)
Bacteroides sp. WH2 (1)
Thomasclavelia spiroformis DSM 1552 (1)
Faecalibacterium prausnitzii M21/2 (1)
[Clostridium] scindens ATCC 35704 (1)
[Ruminococcus] torques ATCC 27756 (1)

Organisms

Cellvibrio japonicus (4)
gut metagenome (4)
bovine gut metagenome (3)
Caldicellulosiruptor bescii DSM 6725 (2)
Aspergillus niger (2)
feces metagenome (2)
human gut metagenome (2)
Apiotrichum akiyoshidainum (1)
Teredinibacter franksiae (1)
Phytophthora boehmeriae (1)
Pseudoalteromonas sp. PA2MD11 (1)
Bacteroides cellulosilyticus WH2 (1)
Streptomyces sp. KAU_LT (1)
Bacillus sp. HSTU-bmb19 (1)
Cobetia sp. ICG0124 (1)
Phanerodontia sp. BRM62389 (1)
Chryseobacterium sp. NG-CE01 (1)
Phytophthora gonapodyides (1)
Phytophthora pseudosyringae (1)
paper pulp metagenome (1)
[Pythium] brassicae (nom. inval.) (1)
Clostridium sp. 12(A) (1)
Bacteroides sp. 14(A) (1)
Prevotella sp. 10(H) (1)
Idiomarina sp. D18 (1)
Lachnoclostridium phytofermentans (1)
Acidomyces richmondensis BFW (1)
Botrytis cinerea B05.10 (1)
Rhodonia placenta (1)
Chryseobacterium wanjuense (1)

Repository

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pride (41)
geo (31)
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Tissue

Cell culture (2)
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Liver (1)
Protein secretion (1)

Disease

Disease free (1)

Technology Type

Mass Spectrometry (41)
Shotgun proteomics (25)
Mass spectrometry (8)
Gel-based experiment (6)
Bottom-up proteomics (5)
Mass spectrometry assay (4)
Data-dependent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Metaproteomics (2)
NMR spectroscopy (1)
MSE (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - hilic (2)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina HiSeq 2500 (1)
LTQ Orbitrap XL (1)
MaXis (1)
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TimsTOF Pro (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Bruker (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2021 (13)
2013 (13)
2022 (11)
2015 (10)
2016 (9)
2018 (9)
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2025 (8)
2024 (8)
2014 (7)
2023 (7)
2017 (5)
2009 (4)
2020 (3)
2019 (3)
2012 (2)
2010 (2)
2005 (1)
2006 (1)

CHEBI ID

CHEBI:18257 (2)
CHEBI:189730 (1)
CHEBI:48294 (1)
CHEBI:166610 (1)
CHEBI:70958 (1)
CHEBI:85156 (1)
CHEBI:4559 (1)
CHEBI:17333 (1)
CHEBI:22990 (1)
CHEBI:133566 (1)
CHEBI:15413 (1)
CHEBI:30762 (1)
CHEBI:133564 (1)
CHEBI:28071 (1)
CHEBI:133561 (1)
CHEBI:133527 (1)
CHEBI:133521 (1)
CHEBI:70811 (1)
CHEBI:133516 (1)
CHEBI:133482 (1)
CHEBI:133480 (1)
CHEBI:28861 (1)
CHEBI:29592 (1)
CHEBI:72601 (1)
CHEBI:27742 (1)
CHEBI:28731 (1)
CHEBI:24236 (1)
CHEBI:29588 (1)
CHEBI:133478 (1)
CHEBI:72620 (1)

Metabolite Name

Betaine (4)
Ornithine (4)
Trigonelline (3)
Phosphorylcholine (3)
Maltose (3)
Hypoxanthine (3)
Mubritinib (2)
Omeprazole sulfone N-oxide (2)
Phthalimide (2)
[4-Amino-2-(ethylamino)-1,3-thiazol-5-yl](4-chlorophenyl)methanone (2)
Milameline (2)
PC(18:1(6Z)/18:1(6Z)) (2)
2-Amino-6-cyclopropyl-4-(4-fluorophenyl)nicotinonitrile (2)
Aminocyclopyrachlor (2)
Oxadiazon (2)
Betamethasone-17-valerate (2)
Ethyl 4-amino-1-piperidinecarboxylate (2)
Arg-Asp (2)
N-(2-Cyanoethyl)valine (2)
Phthalide (2)
Lys-Asp (2)
DMPO (2)
SM(d17:1/24:1(15Z)) (2)
Marshdimerin (2)
N1,N5,N10-Tris-trans-p-coumaroylspermine (2)
Isorhamnetin (2)
Letrozole (2)
1-Hydroxypyrene (2)
Bixin (2)
CDP-4-dehydro-6-deoxy-D-glucose (2)

First Public Date

2026 (58)
2025 (36)
2024 (29)
2014 (24)
2021 (19)
2022 (15)
2019 (13)
2018 (12)
2023 (11)
2020 (11)
2013 (9)
2017 (7)
2015 (6)
2016 (4)
2012 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry, Technical University of Munich, Freising, Germany (1)
Bioengineering, Protein Chemistry & Enzyme Technology, Technical Univesity of Denmark (DTU), Denmark (1)
Biosciences Institute, Newcastle University, Newcastle, UK (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
CRELTEC, IPATEC (UNCO-CONICET), ARGENTINA (1)
Center for Mechanisms of Evolution, Biodesign Institute, School of Life Sciences, Arizona State University, Tempe, Arizona, USA (1)
Departamento de Bioquímica Setor de Ciências Biológicas Centro Politécnico Universidade Federal do Paraná BRAZIL (1)
Department of Biological Sciences, Federal University of Ouro Preto, Minas Gerais, Brazil. (1)
Department of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Department of Medical Microbiology and Immunology, University of Turku, Finland TYKS Microbiology, Turku University Central Hospital, Turku, Finland (1)
Department of Microbiology Guru Nanak Dev University Amritsar 143005 Punjab India (1)
Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany (1)
Department of Plant Pathology and Microbiology, Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel (1)
Ernst-Moritz-Arndt University Greifswald Institute of Microbiology Friedrich-Ludwig-Jahn-Strasse 15 D-17487 Greifswald, Germany (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås, Norway (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432,Ås, Norway (1)
Food Chemistry, Wageningen Universiy & Research, The Netherlands (1)
ICGEB (1)
INBIOTEC (1)
Institute for Microbiology University of Greifswald Friedrich-Ludwig-Jahnstr. 15 17489 Greifswald Germany (1)
Institute for Plant Sciences, University of Cologne, 50674 Cologne, Germany (1)
Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, 1349-017 Lisbon, Portugal (1)
International Centre for Genetic Engineering and Biotechnology Aruna Asaf Ali Marg 110 067 New Delhi, India (1)
Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Departement of Molecular and Applied Microbiology Germany (1)
Molecular Proteomics Laboratory BMFZ Heinrich Heine University Düsseldorf Universitätsstraße 1 40225 Düsseldorf Germany (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

fungi (7)
bacteria (7)

Study type

Transcription profiling by array (16)
RNA-seq of coding RNA (12)
Comparative genomic hybridization by array (1)

Release Date

2022 (176)
2021 (149)
2025 (147)
2024 (143)
2023 (143)
2020 (102)
2019 (94)
2018 (93)
2017 (74)
2016 (57)
2015 (42)
2013 (38)
2014 (37)
2012 (28)
2010 (20)
2011 (16)
2026 (13)
2009 (12)
2007 (6)
2008 (4)
2005 (4)
2004 (4)
2006 (3)
2003 (2)
2001 (1)

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High-quality RNA extraction and regulation of carbohydrate active enzymes is correlated with stage of growth in anaerobic fungi

High-quality RNA extraction and regulation of carbohydrate active enzymes is correlated with stage of growth in anaerobic fungi Metagenome

PRJNA887131 | ENA

Shotgun proteomic analysis of the Methionine oxidation of carbohydrate-active enzymes during white-rot wood decay.

Methionine oxydation level was monitored by tandem mass spectrometry for secreted proteins and intracellular proteins from the white-rot fungus Pycnoporus cinnabarinus grown on aspen wood.

ORGANISM(S): Pycnoporus <basidiomycete fungi>

2024-11-06 | PXD046271 | Pride

The Carbohydrate-Active Enzymes (CAZymes) required for cellulose deconstruction in Cellvibrio japonicus are part of an efficient cellodextrin uptake system

PRJNA1211626 | ENA

Transcriptomic analysis reveals three important carbohydrate-active enzymes contributing to starch degradation of oleaginous yeast Lipomyces starkeyi

PRJNA1154252 | ENA

The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger

Fungi are an important source of enzymes for saccharification of plant polysaccharides and production of biofuels. Understanding of the regulation and induction of expression of genes encoding these enzymes is still incomplete. To explore the induction mechanism, we analysed the response of the indu...

ORGANISM(S): Aspergillus niger

2014-08-22 | E-GEOD-57315 | biostudies-arrayexpress

The carbohydrate-active enzymes database (CAZy) in 2013.

Not available

S-EPMC3965031 | biostudies-literature

CANDy: Automated analysis of domain architectures in carbohydrate-active enzymes.

Not available

S-EPMC11238990 | biostudies-literature

Using Carbohydrate Interaction Assays to Reveal Novel Binding Sites in Carbohydrate Active Enzymes.

Not available

S-EPMC4978508 | biostudies-literature

Functional Carbohydrate-Active Enzymes Acquired by Horizontal Gene Transfer from Plants in the Whitefly Bemisia tabaci.