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MetabolomicsEnzyme engineering for optimizing biosynthesis of 2,4-dihydroxybutyric acid via the synthetic threose-dependent glycolaldehyde assimilation (STEGA) pathway
Ethylene glycol is a potential feedstock for next-generation biorefineries, as it can be derived from both plastic waste and carbon dioxide. The synthetic D-threose-dependent glycolaldehyde assimilation (STEGA) pathway, which is orthogonal to central metabolism of Escherichia coli, was recently cons...
2026-07-15 | MTBLS15050 | MetaboLights
MetabolomicsHierarchical Carbon Metabolism in Iron-Deficient Bacteria Favors Iron-Scavenging Strategy

High-affinity iron (Fe) scavenging compounds, or siderophores, are widely employed by soil bacteria to survive scarcity in bioavailable Fe. Siderophore biosynthesis relies on cellular carbon metabolism, despite reported decrease in both carbon uptake and Fe-containing metabolic proteins in Fe-def...

2020-12-05 | MTBLS1715 | MetaboLights
MetabolomicsPhotosynthetic Carbon Partitioning and Metabolic Regulation in Response to Very-Low and High CO2 in Microchloropsis gaditana NIES 2587
Photosynthetic organisms fix inorganic carbon through carbon capture machinery (CCM) that regulates the assimilation and accumulation of carbon around ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). However, few constraints that govern the central carbon metabolism are regulated by the ca...
2022-01-14 | MTBLS1778 | MetaboLights
ProteomicsAcetylation Coordinates the Crosstalk between Carbon Metabolism and Ammonium Assimilation
Enteric bacteria use up to 15% of their cellular energy for ammonium assimilation via glutamine synthetase (GS)/glutamate synthase (GOGAT) and glutamate dehydrogenase (GDH), in response to low or high ammonium availability. However, the sensory mechanisms for effective and appropriate coordination b...
ORGANISM(S): Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) 
2023-06-21 | PXD039658 | Pride
Ammonium assimilation Acetylation Coordination Carbon metabolism 
TranscriptomicsComparison of 2 aspen genotypes having similar carbon assimilation rates but different allocation patterns under elevated CO2
• Reference to published study making use of this data: • Cseke LJ, Tsai C-J, Rogers A, Nelsen MP, White HL, Karnosky DF, Podila GK. (2009) Transcriptomic comparison in the leaves of two aspen genotypes having similar carbon assimilation rates but different allocation patterns under elevated CO2. N...
ORGANISM(S): Populus tremuloides 
2009-03-31 | E-GEOD-14881 | biostudies-arrayexpress
ProteomicsAlgal Protein Kinase, Triacylglycerol Accumulation Regulator1, Modulates Cell Viability and Gametogenesis in Carbon/Nitrogen Imbalanced Conditions
Nutrient-deprived microalgae accumulate triacylglycerol (TAG) in lipid droplets. A Dual-specificity tyrosine phosphorylation-regulated kinase, TAG-accumulation-regulator-1 (TAR1) has been shown to be required for acetate-dependent TAG accumulation and degradation of chlorophyll and photosynthesis-re...
ORGANISM(S): Chlamydomonas 
2019-07-22 | PXD012391 | JPOST Repository
TranscriptomicsThe CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation
The identification and characterization of the transcriptional regulatory networks governing the physiological behaviour and adaptation of microbial cells is a key step in understanding their behaviour. One such wide-domain regulatory circuit, essential to all cells, is carbon catabolite repression ...
ORGANISM(S): Hypocrea jecorina 
2011-06-01 | E-GEOD-21072 | biostudies-arrayexpress
UnknownQuantifying mangrove carbon assimilation rates using UAV imagery.
Not available
S-EPMC10897312 | biostudies-literature
UnknownImproving CLM5.0 Biomass and Carbon Exchange Across the Western United States Using a Data Assimilation System.
Not available
S-EPMC8365651 | biostudies-literature
TranscriptomicsCarbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus
Abstract: A large part of the nitrogen in forest soils is found in recalcitrant organic matter-protein complexes. Ectomycorrhizal fungi are thought to have a key role in the decomposition and mobilization of nitrogen from such complexes. The knowledge on the functional mechanisms of these processes,...
ORGANISM(S): Paxillus involutus ATCC 200175 
2013-04-30 | E-GEOD-45303 | biostudies-arrayexpress
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