Carlson P P - OmicsDI

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Unknown (1355)
Proteomics (81)
Transcriptomics (49)
Metabolomics (33)
Genomics (4)
Genomic (2)
Multiomics (2)
Other (1)

Organisms

Homo sapiens (48)
Mus musculus (29)
Drosophila melanogaster (9)
Saccharomyces cerevisiae (6)
Sus scrofa domesticus (6)
Sordaria macrospora (5)
Caenorhabditis elegans (3)
Verticillium dahliae JR2 (3)
Chlamydia trachomatis (2)
Zea mays (2)
Candida albicans (2)
Mycobacterium tuberculosis H37Rv (2)
Sparus aurata (2)
Populus deltoides (1)
Populus x canadensis (1)
Populus tremula x Populus tremuloides (1)
Francisella tularensis (1)
Aedes aegypti (1)
Bos taurus (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Bacillus subtilis (1)
Bacteria (1)
Oncorhynchus mykiss (1)
Phytophthora cinnamomi (1)
Plasmodium falciparum NF54 (1)

Organisms

Rattus norvegicus (1)

Repository

pride (78)
biostudies-arrayexpress (49)
MetaboLights (31)
EGA (3)
dbGaP (2)
GNPS (2)
MassIVE (2)
PeptideAtlas (2)
ENA (1)

Tissue

Cell culture (18)
Epithelial cell (11)
Brain (4)
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Heart (3)
Whole body (3)
Cell line cell (2)
Embryonic stem cell (2)
Fibroblast (2)
HEK-293 cell (2)
HeLa cell (2)
Liver (2)
Lung (2)
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Cell suspension culture (1)
Cerebellum (1)
Cerebral cortex pyramidal neuron (1)
Colon (1)
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Esophagus (1)
Glutamatergic neuron (1)
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Leaf (1)
Macrophage (1)
Melanocyte (1)
Neuronal stem cell (1)
T cell (1)

Disease

Avian influenza (3)
Influenza (3)
Ciliopathy (2)
Disease free (2)
Melanoma (2)
Pulmonary tuberculosis (2)
Ovarian cancer (1)
Acute myeloid leukemia (1)
Barrett's esophagus (1)
Breast cancer (1)
Colon cancer (1)
Gastric adenocarcinoma (1)
Neuroblastoma (1)
Parasitic helminthiasis infectious disease (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (78)
Shotgun proteomics (36)
Affinity purification coupled with mass spectrometry proteomics (27)
Mass spectrometry (18)
Bottom-up proteomics (16)
Data-dependent acquisition (13)
NMR spectroscopy (11)
Gel-based experiment (9)
Data-independent acquisition (6)
Mass spectrometry assay (3)
SWATH MS (2)
Top-down proteomics (2)
NMR spectroscopy assay (1)
Affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Bruker (5)
Liquid Chromatography MS - negative - reverse phase (4)
Nuclear Magnetic Resonance (NMR) - (4)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (3)
Bruker maXis ESI Quadrupole TOF (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
LCQ Classic (2)
LTQ FT (1)
MaXis (1)
Orbitrap Fusion ETD (1)
GCT Premier (Waters) (1)
Liquid Chromatography MS - negative - hilic (1)
MaXis (Bruker) (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - - - Bruker (1)
Nuclear Magnetic Resonance (NMR) - - - Varian (1)
Varian (1)

Publication Date

2023 (26)
2021 (16)
2026 (14)
2022 (13)
2010 (12)
2009 (10)
2025 (10)
2019 (9)
2024 (9)
2011 (7)
2015 (5)
2014 (5)
2012 (5)
2020 (5)
2018 (4)
2013 (3)
2008 (3)
2016 (2)
2007 (2)
2017 (2)
2004 (2)

UNIPROT ID/AC

P06208-2 (1)
P07263-2 (1)
Q01532 (1)

CHEBI ID

CHEBI:15891 (12)
CHEBI:15354 (11)
CHEBI:16919 (11)
CHEBI:17295 (11)
CHEBI:17750 (11)
CHEBI:18019 (11)
CHEBI:16856 (10)
CHEBI:16857 (10)
CHEBI:17053 (10)
CHEBI:17191 (10)
CHEBI:17203 (10)
CHEBI:17895 (10)
CHEBI:30751 (10)
CHEBI:15428 (9)
CHEBI:15603 (9)
CHEBI:16027 (9)
CHEBI:16414 (9)
CHEBI:17196 (9)
CHEBI:18012 (9)
CHEBI:18050 (9)
CHEBI:16135 (8)
CHEBI:16643 (8)
CHEBI:17115 (8)
CHEBI:17368 (8)
CHEBI:17754 (8)
CHEBI:25017 (8)
CHEBI:78320 (8)
CHEBI:15347 (7)
CHEBI:15366 (7)
CHEBI:15422 (7)

Metabolite Name

Taurine (9)
Choline (6)
Creatine (6)
Glutathione (6)
Adenosine triphosphate (5)
D-Glucose (5)
Glycine (5)
L-glutamic acid (5)
L-glutamine (5)
L-lysine (5)
Myo-Inositol (5)
Adenine (4)
Dimethylamine (4)
Formate (4)
Fumarate (4)
Histamine (4)
Histidine (4)
L-Arginine (4)
L-Asparagine (4)
L-Glutamine (4)
L-Isoleucine (4)
L-Lactic acid (4)
L-Leucine (4)
L-Lysine (4)
L-Methionine (4)
L-Phenylalanine (4)
L-Proline (4)
L-Threonine (4)
L-Valine (4)
L-alanine (4)

First Public Date

2025 (1)

Modification

6-dioxaoctanediamine derivatized cysteine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (34)
RNA-seq of coding RNA (5)
ChIP-chip by tiling array (3)
Transcription profiling by tiling array (3)
Comparative genomic hybridization by array (2)
Unknown experiment type (1)
Other (1)

Release Date

2022 (146)
2021 (126)
2023 (118)
2024 (97)
2025 (96)
2020 (95)
2014 (86)
2019 (81)
2013 (70)
2018 (67)
2017 (64)
2016 (63)
2015 (61)
2012 (42)
2010 (41)
2011 (40)
2008 (33)
2009 (29)
2026 (23)
2007 (7)
2006 (5)
2005 (4)
2004 (4)
2002 (3)
1998 (2)
1988 (1)

Lab affiliation

Institute for Cardiovascular Regeneration, Centre for Molecular Medicine, Goethe University Frankfurt am Main, Germany (5)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
Director, Translational Proteomics Research Unit, IRCM Director, Biomarker Pipeline for Precision Medicine Strategic Initiative Full IRCM Research Professor Full Research Professor, Department of Biochemistry and Molecular Medicine (accreditation for the Molecular Biology Programs), Université de Montréal Holder of the Bell-Bombardier Chair of Excellence Person in charge of responsible conduct of research, IRCM (2)
Georg-August University, Institute of Microbiology and Genetics, Department of Genetics of Eukaryotic Microorganisms (2)
Georg-August-University Göttingen, Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics (2)
Global Health Institute, EPFL, Lausanne, Switzerland (2)
Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems,Germany (2)
Medical Bioanalytics Institute for Ophthalmic Research Eberhard-Karls-University Tuebingen (2)
University of Göttingen, Institute of Microbiology and Genetics, Department of Molecular Microbiology and Genetics (2)
1. Institute for Genome Stability in Aging and Disease, Medical Faculty, University of Cologne, Germany 2. Cologne Excellence Cluster for Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany (1)
Biology (1)
CECAD Excellence Center, University of Cologne, 50931 Cologne, Germany; Department of Physiology and Pathophysiology, Faculty of Medicine, University Hospital of Cologne, 50931 Cologne, Center for Molecular Medicine Cologne, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; Institute of Genetics, Natural Faculty, University of Cologne, 50931 Cologne, Germany (1)
CECAD Research Center, University of Cologne ,Institute of Genetics, Cologne, Germany (1)
CRUK - Scotland Institute - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Center of Marine Sciences (CCMAR), Universidade do Algarve, Faro, Portugal (1)
Centre of Marine Sciences (CCMAR), Portugal University of Algarve (UAlg), Portugal (1)
Chair of Proteomics and Bioanalytics Technische Universitaet Muenchen Partner Site of the German Cancer Consortium Emil Erlenmeyer Forum 5 85354 Freising Germany (1)
Collège de France, Oncologie Cellulaire et Moléculaire, PSL University, INSERM UMR 1050, CNRS UMR 7241, INSERM UMR 944, CNRS UMR 7212, Université de Paris, IRSL, Hôpital St. Louis Paris France (1)
Department of Biochemistry and Molecular Biology, the Institute for Medical Research Israel ג€“ Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel, 9112001. (1)
Department of Biochemistry and Molecular Genetics, University of Colorado (1)
Department of Cardiology, University Medical Center Mainz, Germany (1)
Department of Cellular and Molecular Biology and Pathogenic Bioagents Ribeirão Preto Medical School University of São Paulo (USP), Brazil (1)
Department of Chemistry and Konstanz Research School Chemical Biology, University of Konstanz, Germany (1)
Department of Chemistry, Lomonosov Moscow State University, Leninskye Gory 1, 119991 Moscow, Russia (1)
Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (1)
Department of Clinical and Toxicological Analysis, Federal University of Alfenas, Brazil (1)
Department of Genetics, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Jerusalem, Israel (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)
Department of Molecular & Medical Genetics Oregon Health & Science University 3181 SW Sam Jackson Park Rd. Portland, Oregon 97239, USA (1)
Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics and Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Germany (1)

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xref:PubMed:40103584 (1)

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Pro-inflammatory human Th17 cells selectively express P-glycoprotein and are refractory to glucocorticoids.

Not available

S-EPMC3892977 | biostudies-literature

Northern Nordic river mouth N:P:Si stoichiometry shows limited evidence of Si depletion.

Not available

S-EPMC12783807 | biostudies-literature

Metabolic consequences of cobalamin scarcity in diatoms as revealed through metabolomics (Thalassiosira pseudonana study)

Diatoms perform about 20% of photosynthesis on earth, play a crucial role in forming the base of the marine food web, and sequester anthropogenic carbon into the deep ocean through the biological pump. In some areas of the ocean, diatom growth is limited by the organic micronutrient cobalamin (vi...

2019-06-04 | MTBLS703 | MetaboLights

A polygenic risk score for breast cancer in women receiving tamoxifen or raloxifene on NSABP P-1 and P-2.

Not available

S-EPMC4327931 | biostudies-literature

Oral tongue cancer gene expression profiling: Identification of novel potential prognosticators

Background: The present study is aimed at identifying potential candidate genes as prognostic markers in human oral tongue squamous cell carcinoma (SCC) by large scale gene expression profiling. Methods: The gene expression profile of patients (n=37) with oral tongue SCC were analyzed using Affyme...

ORGANISM(S): Homo sapiens

2008-11-14 | E-GEOD-13601 | biostudies-arrayexpress

Deficiency in the 15 kDa Selenoprotein Inhibits Tumorigenicity and Metastasis of Colon Cancer Cells

Selenium has cancer preventive activity that is mediated, in part, through selenoproteins. The role of the 15 kDa selenoprotein (Sep15) in colon cancer was assessed by preparing and using mouse colon CT26 cells stably transfected with shRNA constructs targeting Sep15. Metabolic 75Se-labeling and Nor...

ORGANISM(S): Mus musculus

2010-07-06 | E-GEOD-20390 | biostudies-arrayexpress

A cane improves postural recovery from an unpracticed slip during walking in people with Parkinson disease.

Not available

S-EPMC3432949 | biostudies-literature

Identification of Genetic Variation between Obligate Plant Pathogens Pseudoperonospora cubensis and P. humuli Using RNA Sequencing and Genotyping-By-Sequencing.

Not available

S-EPMC4658093 | biostudies-literature

Free Energies and Entropies of Binding Sites Identified by MixMD Cosolvent Simulations.

Not available

S-EPMC6549510 | biostudies-literature

Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster.