Castor - OmicsDI

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Unknown (671)
Genomics (143)
Transcriptomics (114)
Proteomics (56)
Metabolomics (12)
Other (3)
Methylation profiling (1)

Organisms

Mus musculus (48)
Homo sapiens (36)
Rattus norvegicus (9)
Heterocephalus glaber (8)
Castor canadensis (6)
Ricinus communis (5)
Drosophila melanogaster (4)
Bathyergus suillus (3)
Macaca fascicularis (3)
Ursus americanus (3)
Peromyscus leucopus (3)
Mus musculus domesticus (2)
Canis lupus familiaris (2)
Escherichia coli (2)
Sus scrofa (2)
Rhabdomys pumilio (2)
Myodes glareolus (1)
Ixodes ricinus (1)
Hevea brasiliensis (1)
Ehrlichia chaffeensis str. Arkansas (1)
Manihot esculenta (1)
Litomosoides sigmodontis (1)
Rhipicephalus microplus (1)
Gossypium hirsutum (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Macaca mulatta (1)
Helicobacter pylori (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Arabidopsis thaliana (1)

Organisms

Ricinus communis (28)
Castor fiber (8)
Castor canadensis (8)
Achaea janata (5)
Drosophila melanogaster (3)
Mus musculus (3)
Zea mays (2)
gut metagenome (2)
Fusarium oxysporum f. sp. ricini (1)
Castor fiber fiber (1)
Botryotinia ricini (1)
Plukenetia volubilis (1)
Macrophomina phaseolina (1)
Xanthomonas euvesicatoria (1)
Rhodotorula paludigena (1)
Schmidtea mediterranea (1)
Hevea brasiliensis (1)
Brassica napus (1)
Arabidopsis thaliana (1)

Repository

ENA (126)
biostudies-arrayexpress (112)
MassIVE (25)
pride (17)
geo (14)
MetaboLights (12)
EGA (6)
PAXDB (6)
jPOST (5)
iProX (3)
PanoramaPublic (2)
GPMDB (1)

Tissue

Bone (5)
Tooth (2)
Skin (2)
Nectar (1)
Antler (1)
Hair (1)
Seed (1)
Plant cell (1)
Bone marrow (1)
Whole body (1)
Photosynthetic cell (1)
Primary cell (1)
B cell (1)
Liver (1)
Blood (1)
Cell culture (1)

Disease

Psoriasis vulgaris (1)
Not Available (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (17)
Shotgun proteomics (13)
Mass spectrometry (9)
Bottom-up proteomics (2)
NMR spectroscopy assay (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
NextSeq 2000 (6)
Orbitrap Fusion Lumos (6)
NextSeq 500 (4)
LTQ Orbitrap Elite (4)
Q Exactive (4)
Illumina HiSeq 4000 (3)
LTQ Orbitrap (3)
PromethION (2)
PacBio RS II (2)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 (2)
LTQ XL ETD (2)
LTQ XL (2)
Orbitrap Fusion (2)
Orbitrap Eclipse (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
ProFlex PCR system (1)
NovaSeq6000 (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 3000 (1)
Instrument (1)
LTQ Velos (1)
LTQ Orbitrap Velos (1)
Q Exactive HF-X (1)
6560 Q-TOF LC/MS (1)
Q Exactive HF (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)

Publication Date

2026 (20)
2012 (19)
2023 (17)
2011 (17)
2024 (16)
2022 (12)
2025 (11)
2009 (9)
2021 (9)
2020 (8)
2014 (8)
2018 (7)
2019 (6)
2017 (6)
2016 (6)
2008 (5)
2013 (4)
2010 (4)
2007 (4)
2015 (3)
2006 (1)
2005 (1)

UNIPROT ID/AC

Q8IIK9_PLAF7 (2)
Q8ILI7_PLAF7 (2)
O96219_PLAF7 (2)
Q8I482_PLAF7 (2)
Q8IAT5_PLAF7 (2)
Q9U0M7_PLAF7 (2)
Q8I5H7_PLAF7 (2)
C0H4N9_PLAF7 (2)
C0H4U0_PLAF7 (2)
Q8IBZ7_PLAF7 (2)
Q8II73_PLAF7 (2)
C6KTF3_PLAF7 (2)
C6KT59_PLAF7 (2)
Q8IL51_PLAF7 (2)
Q8IEN2_PLAF7 (2)
Q8IBP4_PLAF7 (2)
Q8IC14_PLAF7 (2)
C0H5J6_PLAF7 (2)
Q8I3F8_PLAF7 (2)
Q8I5Y1_PLAF7 (2)
Q8I2Q0_PLAF7 (2)
Q8I320_PLAF7 (2)
Q8ILZ3_PLAF7 (2)
A0A143ZZG4_PLAF7 (2)
Q8IJ32_PLAF7 (2)
Q8IIR2_PLAF7 (2)
5833.PF14_0009 (2)
O77361_PLAF7 (2)
5833.PFB0050c (2)
Q8I261_PLAF7 (2)

CHEBI ID

CHEBI:15354 (3)
CHEBI:16737 (3)
CHEBI:17368 (3)
CHEBI:67057 (2)
CHEBI:91312 (2)
CHEBI:133515 (2)
CHEBI:16628 (2)
CHEBI:16354 (2)
CHEBI:15688 (2)
CHEBI:82914 (2)
CHEBI:85870 (2)
CHEBI:15724 (2)
CHEBI:78647 (2)
CHEBI:24813 (2)
CHEBI:24149 (2)
CHEBI:35932 (2)
CHEBI:133144 (2)
CHEBI:73004 (2)
CHEBI:133456 (2)
CHEBI:72998 (2)
CHEBI:131991 (2)
CHEBI:64591 (2)
CHEBI:64592 (2)
CHEBI:85742 (2)
CHEBI:84659 (2)
CHEBI:85743 (2)
CHEBI:84660 (2)
CHEBI:84661 (2)
CHEBI:85736 (2)
CHEBI:90302 (2)

Metabolite Name

Acetoin (3)
Betaine (3)
Benzyl alcohol (3)
L-Tryptophan (3)
Hypoxanthine (3)
Niacinamide (3)
Creatinine (3)
L-Histidine (3)
Choline (3)
Trp-Pro (2)
Dicyclohexylamine (2)
1-Butanol (2)
2-Nonanone (2)
Cyasterone (2)
Sibutramine (2)
Drostanolone propionate (2)
Zafirlukast (2)
Deoxyvasicinone (2)
Benzidine (2)
Levofloxacin (2)
Lys-Asp (2)
Propargite (2)
Flutriafol (2)
Oxadixyl (2)
Tributyl phosphate (2)
Melezitose (2)
(R)-3-hydroxybutyrylcarnitine (2)
Succinylacetone (2)
N-acetylputrescine (2)
N-acetylhistidine (2)

First Public Date

2025 (17)
2023 (17)
2022 (12)
2019 (12)
2026 (11)
2024 (11)
2017 (8)
2021 (7)
2020 (7)
2018 (6)
2013 (6)
2014 (5)
2015 (4)
2016 (2)
2011 (1)

Classification

fungi (1)

Modification

Not available (1)

Study type

Transcription profiling by array (57)
RNA-seq of coding RNA (29)
ChIP-seq (5)
DNA-seq (4)
RNA-seq of total RNA (3)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
Other (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (90)
2025 (77)
2023 (76)
2024 (74)
2019 (57)
2021 (57)
2020 (56)
2016 (35)
2018 (35)
2011 (34)
2017 (33)
2012 (29)
2026 (25)
2015 (24)
2014 (20)
2013 (15)
2009 (13)
2008 (12)
2010 (8)
2007 (5)
2006 (3)
2005 (3)
2001 (1)
1998 (1)

Lab affiliation

Pacific Northwest National Laboratory (2)
Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden. (1)
Department of Biologyy, University of Rochester, NY, USA University of Rochester Mass Spectrometry Resource Laboratory, NY, USA (1)
The GLOBE Institute, University of Copenhagen (1)
Laboratoire MSAP UAR 3290 CNRS Bâtiment C4 Avenue Paul Langevin Cité Scientifique 59655 Villeneuve D'ascq (1)
Chemical and Biological Signatures Group, Pacific Northwest National Laboratory (1)
BioArCh, University of York, United Kingdom (1)
Molecular Proteomics Laboratory, BMFZ, Universitätsklinikum, Düsseldorf, Germany (1)
Biological and Biomedical Sciences (1)
Federal University of Rio de Janeiro (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Faculty of Pharmaceutical Sciences, Ghent University, Belgium (1)
Depart of Biology University of Rochester (1)
Laboratoire MSAP UAR 3290 CNRS Bâtiment C4 Avenue Paul Langevin Cité Scientifique 59655 Villeneuve D'ascq 03 20 33 71 12 https://msap-lab.fr/ (1)
MSAP UAR 3290 CNRS (1)
University of Washington (1)
Nanjing University, Nanjing 210023, China (1)

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Transcriptome analysis of Drosophila CNS midline cells reveals diverse peptidergic properties and a role for castor in neuronal differentiation

One of the key aspects of neuronal differentiation is the array of neurotransmitters and neurotransmitter receptors that each neuron possesses. One important goal of developmental neuroscience is to understand how these differentiated properties are established during development. In this paper, we ...

ORGANISM(S): Drosophila melanogaster

2012-10-12 | E-GEOD-41510 | biostudies-arrayexpress

North American Beaver (Castor canadensis) RNAseq 16 pooled tissue samples.

RNAseq from Illumina MiSeq 75bp paired end for transcriptome assembly. The following tissue samples were pooled: skeletal muscle; kidney; spleen; ovaries; placenta; castor gland; tail; toe webbing; whole blood; brain; lung; liver; heart; stomach; tongue; intestine

ORGANISM(S): Castor canadensis

2017-12-24 | E-MTAB-6258 | biostudies-arrayexpress

Castor canadensis

Castor canadensis Genome - Transcriptome Sequencing and Assembly

PRJNA359140 | ENA

Castor canadensis isolate:PB-2018

Castor canadensis isolate:PB-2018 Genome sequencing and assembly

PRJNA505050 | ENA

Castor canadensis isolate:mCasCan1

Castor canadensis (North American beaver) genome, mCasCan1, haplotype 2

PRJNA1197685 | ENA

Castor canadensis isolate:mCasCan1

Castor canadensis (North American beaver) genome, mCasCan1, haplotype 1

PRJNA1197684 | ENA

RNAseq of 16 North American Beaver (Castor canadensis) tissues

RNAseq from the following tissue samples: skeletal muscle; kidney; spleen; ovaries; placenta; castor gland; tail; toe webbing; whole blood; brain; lung; liver; heart; stomach; tongue; intestine

ORGANISM(S): Castor canadensis

2019-07-02 | E-MTAB-8038 | biostudies-arrayexpress

Genome-wide identification of heterotrimeric G protein genes in castor (Ricinus communis L.) and expression patterns under salt stress.

Not available

S-EPMC11577925 | biostudies-literature

Castor fiber

Castor fiber Assembly

PRJNA355853 | ENA

Castor canadensis

Castor canadensis overview

PRJNA290667 | ENA