Cdc - OmicsDI

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Unknown (16309)
Genomics (1507)
Transcriptomics (444)
Proteomics (49)
Metabolomics (19)
Genomic (10)
Models (6)
Other (6)
Clinical (4)
Methylation profiling (4)

Organisms

Mus musculus (229)
Homo sapiens (171)
Rattus norvegicus (17)
Saccharomyces cerevisiae (15)
Schizosaccharomyces pombe (8)
Drosophila melanogaster (8)
Plasmodium falciparum 3D7 (6)
Arabidopsis thaliana (5)
Bos taurus (4)
Bacillus anthracis str. Sterne (3)
Amphibia (2)
Mus musculus domesticus (2)
synthetic construct (2)
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Anopheles gambiae (2)
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Panthera tigris altaica (1)
Bordetella holmesii (1)
Cicer arietinum (1)
Teleopsis dalmanni (1)
Saccharomyces paradoxus (1)
Schistosoma japonicum (1)
Plasmodium vivax (1)
Aspergillus niger (1)
Synechococcus elongatus (1)
Vibrio vulnificus (1)
Dictyostelium discoideum (1)
Fragaria x ananassa (1)
Sordaria macrospora (1)
Macaca mulatta (1)

Organisms

Mus musculus (151)
Homo sapiens (67)
Linum usitatissimum (25)
Campylobacter coli (21)
Severe acute respiratory syndrome coronavirus 2 (20)
Coxsackievirus A6 (13)
Campylobacter jejuni (13)
Influenza A virus (12)
Rattus norvegicus (12)
Enterovirus A71 (10)
Elizabethkingia anophelis (10)
Legionella pneumophila (9)
Neisseria meningitidis (8)
Tuanshanicoccus lijuaniae (7)
Salmonella enterica (7)
Salmonella enterica subsp. enterica (7)
Staphylococcus aureus (7)
Klebsiella pneumoniae (6)
Gordonia jinghuaiqii (5)
Influenza B virus (5)
Cicer arietinum (5)
Shigella flexneri (5)
Vibrio cholerae (5)
Streptococcus zhangguiae (4)
Nocardioides marmotae (4)
Yersinia pestis (4)
Acinetobacter pengchengensis (4)
Lodderomyces parapsilosis (4)
Tuanshanicoccus yangjingiae (4)
Candidozyma auris (4)

Repository

ENA (1455)
biostudies-arrayexpress (292)
geo (195)
MassIVE (23)
EGA (19)
MetaboLights (19)
pride (14)
dbGaP (10)
jPOST (7)
BioModels (5)
PanoramaPublic (2)
ExpressionAtlas (1)
FAIRDOMHub (1)
iProX (1)
PeptideAtlas (1)

Tissue

B cell (2)
Dendritic cell (2)
Heart (2)
Whole body (2)
Blood plasma (1)
Culture condition:oleate-grown cell (1)
Dental plaque (1)
Epithelial cell (1)
Heart left ventricle (1)

Disease

Colorectal Neoplasms (3)
Diabetes mellitus (2)
Mild spinal cord injury (1)
HIV encephalitis (1)
Insulitis and diabetes (1)
Glioblastoma (1)
Hepatocellular carcinoma (1)
Normal (1)
Crohn Disease (1)
Acute leukemia (1)
Bacterial infectious disease (1)
COVID-19 (1)
Cardiovascular system disease (1)
Dental caries (1)

Technology Type

Mass spectrometry (17)
Mass Spectrometry (14)
Shotgun proteomics (7)
Bottom-up proteomics (3)
Mass spectrometry assay (2)
Data-independent acquisition (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (12)
Q Exactive (8)
Illumina HiSeq 2500 (6)
Illumina HiSeq 4000 (5)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (5)
Q Exactive Plus (4)
Flow Injection Analysis MS - Alternating (FIA-MS (Alternating)) (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
Orbitrap Fusion (3)
Orbitrap Fusion Lumos (3)
Illumina NovaSeq X (2)
Orbitrap Eclipse (2)
Orbitrap Exploris 480 (2)
Q Exactive HF (2)
Illumina HiSeq 4000 system (1)
MA900, Sony (1)
10x Chromium Controller (1)
Illumina Genome Analyzer IIx;Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Affymetrix Fluidics Station 400 (1)
DNBSEQ-G400 (1)
BGISEQ-500 (1)
Illumina HiSeq 1500 (1)
Q Exactive HF-X (1)
TimsTOF SCP (1)
TripleTOF 5600 (1)
TripleTOF 6600 (1)

Publication Date

2014 (47)
2010 (41)
2025 (40)
2012 (39)
2015 (35)
2021 (34)
2024 (32)
2013 (32)
2020 (30)
2023 (29)
2022 (26)
2016 (25)
2008 (25)
2026 (23)
2019 (20)
2011 (19)
2018 (16)
2009 (14)
2007 (13)
2017 (7)
2005 (4)
2004 (4)
2006 (3)

UNIPROT ID/AC

P35567 (2)
P24033 (2)
A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)
A0A1S3PY93 (1)
Q19VI0 (1)
A0A1S3M1N8 (1)
A0A1S3NHN0 (1)
A0A1S3KZD6 (1)
A0A1S3SD21 (1)
A0A1S3LDQ3 (1)
A0A1S3P3J9 (1)
A0A1S3LD76 (1)
A0A1S3LEH9 (1)
A0A1S3MF70 (1)
A0A1S3MF67 (1)
A0A1S3MEX0 (1)
A0A1S3MEU5 (1)
A0A1S3RYH9 (1)
A0A1S3RYI5 (1)
A0A1S3P4C7 (1)
A0A1S3P297 (1)
A0A1S3P8N0 (1)
A0A1S3PB08 (1)
A0A1S3N1B9 (1)

CHEBI ID

CHEBI:13097 (1)
CHEBI:21278 (1)
CHEBI:63163 (1)
CHEBI:6209 (1)
CHEBI:44590 (1)
CHEBI:21260 (1)
CHEBI:44513 (1)
CHEBI:6206 (1)
CHEBI:44708 (1)
CHEBI:44466 (1)
CHEBI:13094 (1)
CHEBI:47822 (1)
CHEBI:60107 (1)
CHEBI:21486 (1)
CHEBI:60111 (1)
CHEBI:43088 (1)
CHEBI:47823 (1)
CHEBI:28538 (1)
CHEBI:47819 (1)
CHEBI:47821 (1)
CHEBI:21601 (1)
CHEBI:7203 (1)
CHEBI:77859 (1)
CHEBI:19473 (1)
CHEBI:11524 (1)
CHEBI:1021 (1)
CHEBI:12542 (1)
CHEBI:47984 (1)
CHEBI:1022 (1)
CHEBI:42925 (1)

Metabolite Name

Spermidine (5)
Carnosine (4)
Putrescine (4)
Citric acid (4)
Azelaic acid (4)
Total DMA (3)
T4-OH-Pro (3)
PEA (3)
Nitro-Tyr (3)
Met-SO (3)
C4-OH-Pro (3)
Alpha-AAA (3)
Ac-Orn (3)
Orn (3)
Cit (3)
DOPA (3)
Val (3)
Tyr (3)
Trp (3)
Thr (3)
Ser (3)
Pro (3)
Phe (3)
Met (3)
Lys (3)
Leu (3)
Ile (3)
His (3)
Gly (3)
Glu (3)

First Public Date

2024 (198)
2026 (167)
2025 (148)
2020 (145)
2021 (120)
2023 (105)
2022 (101)
2019 (101)
2017 (96)
2014 (89)
2013 (60)
2018 (53)
2016 (40)
2015 (32)

Modelling Approach

Ordinary differential equation model (4)
Constraint-based model (1)

Study status

Completed (3)
Not yet recruiting (1)

Lab affiliation

Advanced Clinical BioSystems Research Institute Smidt Heart Institute Cedars-Sinai Medical Center (1)
Biochemistry and Pharmacology, MDHS Associate Dean of Graduate Research Bio21 Institute The University of Melbourne, Victoria 3010 Australia (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Cardiology, Shanghai East Hospital, Tongji University School of Medicine, No. 150 Jimo Road, Shanghai 200120, China. (1)
Department of Pharmaceutical Sciences, Northeast Ohio Medical University, Rootstown, OH (1)
Director, Advanced Clinical Biosystems Research Institute, Cedars-Sinai Medical Center (1)
Functional Proteomics, ICR (1)
Institute for Genetics and CECAD Research Center, University of Cologne, Cologne, Germany (1)
Laboratório de Hemoparasitas e Vetores, Centro de Ciências Agroveterinárias (CAV), Universidade do Estado de Santa Catarina (UDESC). Av. Luís de Camões, 2090, Conta Dinheiro, Lages, SC, 88520-000 Brazil. (1)
Pratik Jagtap, Managing Director, Center for Mass Spectrometry and Proteomics, 43 Gortner Laboratory, 1479 Gortner Avenue, St. Paul, MN 55108 Phone: 612-624-9275 (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium (1)
Team "Endoplasmic Reticulum stress and cancer", INSERM, UMR1053, Bordeaux, France (1)
Trinity College Dublin, Ireland (1)
Zhejiang Provincial Center for Disease Control and Prevention, China (1)

Keyword

Sri Lanka (1)
Clavien-Dindo Classification (1)
Surgical quality (1)
Anti tumor necrosis alpha (1)
Pneumovax (1)
Pneumococcal vaccine (1)
Immunosuppression (1)
Heptavalent Pneumococcal Conjugate Vaccine (1)

IsPrivate

False (5)

Classification

bacteria (316)
viruses (98)
protozoa (12)
fungi (9)
helminths (1)

Study type

Transcription profiling by array (206)
RNA-seq of coding RNA (38)
ChIP-seq (11)
RNA-seq of coding RNA from single cells (9)
Comparative genomic hybridization by array (6)
Unknown experiment type (3)
ChIP-chip by tiling array (3)
Other (3)
Interventional (3)
Transcription profiling by tiling array (2)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)
Observational (1)

Release Date

2022 (1888)
2021 (1693)
2023 (1545)
2024 (1495)
2025 (1366)
2020 (1358)
2019 (1160)
2018 (1052)
2016 (930)
2017 (907)
2015 (874)
2014 (719)
2013 (416)
2012 (293)
2026 (178)
2011 (177)
2010 (166)
2009 (105)
2008 (87)
2007 (52)
2005 (35)
2006 (30)
2004 (30)
2003 (16)
2002 (11)
2001 (6)
1999 (6)
1998 (2)
2000 (1)
1997 (1)

Location

United States (3)
Sweden (1)

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Treponema pallidum subsp. pertenue strain:CDC-1

Treponema pallidum subsp. pertenue strain:CDC-1 Genome sequencing

PRJNA416916 | ENA

U.S. CDC support to international SARS-CoV-2 seroprevalence surveys, May 2020-February 2022.

Not available

S-EPMC9490761 | biostudies-literature

Expression Data from DLBCL Cell Line U2932 (Parental, CDC-Treated, and CDC-Resistant) and 8 DLBCL Patient Samples (5 High CDC-Sensitive, 3 Low CDC-Sensitive)

PRJNA1180552 | ENA

Clostridium argentinense CDC 2741

Clostridium argentinense CDC 2741 Genome sequencing and assembly

PRJNA225821 | ENA

Microarray analysis of WT ESAM+ and ESAM- cDC subsets

Defense against attaching and effacing (A/E) bacteria requires the sequential generation of IL-23 and IL-22 to induce protective mucosal responses. While the critical source of IL-22 has been identified as CD4+ and Nkp46+ innate lymphoid cells (ILCs), the precise source of IL-23 is unclear. Here, we...

ORGANISM(S): Mus musculus

2013-06-01 | E-GEOD-45679 | biostudies-arrayexpress

FDA/CDC Antimicrobial Resistant Isolate Bank

FDA/CDC Isolate Bank Genome Sequencing

PRJNA316321 | ENA

Differential Peak Calling of ChIP-Seq Signals with Replicates with THOR

Dendritic cells (DC) are professional antigen presenting cells that develop from hematopoietic stem cells in bone marrow by successive steps of lineage commitment and differentiation. Different DC subsets were identified based on phenotype, localisation and function: (i) classical DC (cDC) and plasm...

ORGANISM(S): Mus musculus

2016-08-03 | E-GEOD-73143 | biostudies-arrayexpress

Shigella flexneri CDC 796-83

Shigella flexneri CDC 796-83 genome sequencing

PRJEA60775 | ENA

Photobacterium damselae subsp. damselae strain:CDC-1421-81

Photobacterium damselae subsp. damselae strain:CDC-1421-81 Genome sequencing and assembly

PRJNA641772 | ENA

Linum usitatissimum cultivar:CDC Bethune

Linum usitatissimum cultivar:CDC Bethune Genome sequencing

PRJNA1060737 | ENA