Cellular compartments

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Organisms

Homo sapiens (199)
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wastewater metagenome (1)
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Technology Type

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Instrument Platform

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Publication Date

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UNIPROT ID/AC

MBD3_MOUSE (6)
10090.ENSMUSP00000113068 (6)
KXDL1_MOUSE (6)
GSTP2_MOUSE (6)
E9Q6E5_MOUSE (6)
NHP2_MOUSE (6)
RL18A_MOUSE (6)
CALM1_MOUSE (6)
UIF_MOUSE (6)
PAF1_MOUSE (6)
CATIN_MOUSE (6)
WDR33_MOUSE (6)
F6S4B9_MOUSE (6)
HMGA1_MOUSE (6)
Q9EQC8_MOUSE (6)
TRA2B_MOUSE (6)
P09560 (2)
P14753 (2)
Q90W58 (2)
Q05116 (2)
P26696 (2)
P51149 (1)
P20339 (1)
Q08828 (1)
P63092 (1)
P54750 (1)
Q5T5Y4 (1)
P22629 (1)
P07321 (1)
P17612 (1)

ENSEMBL ID

ENSMUSG00000029711 (1)
ENSMUSG00000006235 (1)
ENSG00000247315 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:24875 (3)
CHEBI:15422 (3)
CHEBI:18248 (2)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:16761 (2)
CHEBI:46195 (1)
CHEBI:19324 (1)
CHEBI:17680 (1)
CHEBI:27569 (1)
CHEBI:28017 (1)
CHEBI:62006 (1)
CHEBI:61993 (1)
CHEBI:63836 (1)
CHEBI:17514 (1)
CHEBI:20935 (1)
CHEBI:15954 (1)
CHEBI:17489 (1)
CHEBI:29042 (1)
CHEBI:17306 (1)
CHEBI:16856 (1)
CHEBI:24636 (1)
CHEBI:32816 (1)
CHEBI:29052 (1)
CHEBI:17634 (1)
CHEBI:18367 (1)
CHEBI:16027 (1)
CHEBI:17754 (1)
CHEBI:16236 (1)
CHEBI:15343 (1)

Metabolite Name

CDP-1,2-dioleoyl-sn-glycerol (1)
Dioleoyl phosphatidylglycerol (1)
1,2-dioleoyl-sn-glycerol-3-phosphate (1)
So(d18:1) (1)
SM(d44:2) (1)
SM(d42:1) (1)
SM(42:0) (1)
PS(P-38:5) (1)
PMeOH(34:1) (1)
DMPE(32:0) (1)
CL(36:3)_(36:3) (1)
CL(34:2)_(34:2) (1)
CL(32:2)_(34:2) (1)
HexCer(d42:1) (1)
HexCer(d34:1) (1)
PC(P-42:2) (1)
PC(P-32:2) (1)
PC(P-30:0) (1)
PC(O-40:2) (1)
PC(O-40:1) (1)
PC(O-38:2) (1)
TG(O-56:3) (1)
TG(O-56:1) (1)
TG(O-54:3) (1)
TG(O-54:2) (1)
TG(O-50:2) (1)
TG(O-50:0) (1)
TG(O-48:1) (1)
TG(64:13) (1)
TG(64:10) (1)

First Public Date

2026 (99)
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2023 (41)
2022 (39)
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2014 (31)
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2018 (13)
2015 (10)
2016 (7)
2013 (4)

Modelling Approach

Ordinary differential equation model (17)
Constraint-based model (4)
Physiologically based pharmacokinetic model (1)

Lab affiliation

Institute for Vascular Signalling, Centre for Molecular Medicine, Goethe University, Frankfurt am Main, Germany. (5)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (3)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
Laboratory of Molecular Basis of Synaptic Plasticity Centre of New Technologies, University of Warsaw (2)
Proteome Dynamics, Max Delbrück Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany Charité-Universitätsmedizin Berlin, 10117 Berlin, Germany (2)
Chair of Pharmacology Faculty of Medicine Jagiellonian University Medical College (2)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (2)
Imperial College London (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Shandong Academy of Agricultural Sciences, Jinan, Shandong, China (2)
Shandong Agricultural University (2)
Estación Experimental del Zaidín, CSIC, Granada, Spain (1)
Department of Immunology, St. Jude Children's Research Hospital (1)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
National Research Council of Italy – Water Research Institute (CNR-IRSA) Molecular Ecology Group (MEG), Verbania, Italy (1)
Group Leader, Quantitative Cell Science, Chan Zuckerberg Biohub San Francisco, Ca, USA (1)
Univ Bordeaux, U1035 INSERM, France (1)
Department of Biochemistry, University of Oxford, UK (1)
Excellence Cluster on Cellular Stress Responses in Aging Associated Diseases (CECAD) and Center for Molecular Medicine Cologne (CMMC), University of Cologne, Joseph-Stelzmann-Strasse 26, 50931 Cologne, Germany (1)
Key Laboratory of Animal Infectious Diseases in Northeast China, Ministry of Education; Key Laboratory of Zoonosis, Shenyang Agricultural University, 120 Dongling Road, Shenyang 110166, China. (1)
Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, Germany (1)
Intravacc, Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, The Netherlands (1)
Proteome Dynamics MDC in the helmholtz association Berlin-Buch (1)
Department of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. (1)
Mechanisms of Diseases & Translational Research, School ofMedical Sciences, Department of Pathology, UNSW, Sydney, Australia (1)
Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK (1)
Biochemistry and Molecular Biology, The Institute for Medical Research Israel-Canada (IMRIC). School of Medicine. The Hebrew University of Jerusalem, Israel. (1)
Department of Cellular and Molecular Pathology, UCSF, San Francisco, CA (1)
Department of Cell and Chemical Biology at the Leiden University Medical Center. (1)

IsPrivate

False (27)

Model Flag

Non Kinetic (4)

Submitter Keywords

Not Peer Reviewed (3)
Manuscript Accepted (1)

Classification

bacteria (1)

Modification

15.994915 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
Not available (1)

Study type

Transcription profiling by array (167)
RNA-seq of coding RNA (51)
ChIP-seq (17)
RNA-seq of coding RNA from single cells (16)
Other (11)
Methylation profiling by array (9)
Cell line - High-throughput sequencing (8)
RNA-seq of non coding RNA (6)
Unknown experiment type (5)
ChIP-chip by tiling array (4)
Transcription profiling by RT-PCR (4)
RNA-seq of non coding RNA from single cells (2)
RNAi profiling by array (2)
Spatial transcriptomics by high-throughput sequencing (2)
Comparative genomic hybridization by array (2)
RNA-seq of total RNA (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
Human - Two-color microarray (1)
RIP-chip by array (1)
Translation profiling (1)
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2003 (14)
2004 (9)
2001 (8)
2000 (8)
1999 (8)
2002 (6)
1998 (2)
1997 (2)

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Mitochondrial-Derived Compartments Facilitate Cellular Adaptation to Amino Acid Stress

Not available

ORGANISM(S): Saccharomyces cerevisiae

ST001901 | MetabolomicsWorkbench

Small RNA deep sequencing of cellular subcompartments

RNA deep sequencing efforts have revealed abundant expression of small RNAs derived from small nucleolar (sno) RNAs. We employ here spatial RNA deep sequencing to assess the expression of 10-40 nt small RNAs in subcellular compartments of HeLa cells. Total cellular, cytoplasmic, nuclear and nucleola...

ORGANISM(S): Homo sapiens

2014-05-07 | E-GEOD-50057 | biostudies-arrayexpress

RNA secondary structome of different cellular compartments in human and mouse

PRJNA483400 | ENA

Transcription profiling of Arabidopsis thaliana seed compartments at the globular embryo stage.

We collected globular stage seed compartments from 5 or 7-micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments of an Arabidopsis seed containing a globular stage embryo. For the purposes of this study we broke down the seed into 7 c...

ORGANISM(S): Arabidopsis thaliana

2008-06-11 | E-GEOD-11262 | biostudies-arrayexpress

Protein quality control systems in different cellular compartments in the context of adaptation to environmental stress.

PRJNA939232 | ENA

Multiple cellular compartments engagement in Nicotiana benthamiana-peanut stunt virus-satRNA interactions revealed by systems biology approach

PRJNA526723 | ENA

Transcription profiling of Arabidopsis seed compartments at the heart stage.

We collected heart stage seed compartments from 7 micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments from seeds containing heart stage embryos. For the purposes of this study we captured 6 compartments: embryo proper, micropylar e...

ORGANISM(S): Arabidopsis thaliana

2009-03-21 | E-GEOD-15160 | biostudies-arrayexpress

Hydrogen peroxide probes directed to different cellular compartments.

Not available

S-EPMC3024970 | biostudies-literature

Transcription profiling of Arabidopsis seed compartments at the mature green stage.

We collected mature green seed compartments from 7 micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments from seeds containing mature green-stage embryos. For the purposes of this study we captured 6 compartments: embryo proper, micr...

ORGANISM(S): Arabidopsis thaliana

2009-03-21 | E-GEOD-15165 | biostudies-arrayexpress

Transcription profiling of Arabidopsis seed compartments at the pre-globular and linear-cotyledon stages

This SuperSeries is composed of the following subset Series:; GSE12402: Expression data from Arabidopsis seed compartments at the pre-globular stage. GSE12403: Expression data from Arabidopsis seed compartments at the linear-cotyledon stage. Experiment Overall Design: Refer to individual Series

ORGANISM(S): Arabidopsis thaliana

2008-10-21 | E-GEOD-12404 | biostudies-arrayexpress

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