Chang G G - OmicsDI

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Unknown (8544)
Transcriptomics (445)
Proteomics (241)
Genomics (98)
Metabolomics (59)
Multiomics (8)
Models (5)
Methylation profiling (1)

Organisms

Homo sapiens (325)
Mus musculus (135)
Arabidopsis thaliana (24)
Corynebacterium glutamicum ATCC 13032 (21)
Corynebacterium glutamicum (16)
Saccharomyces cerevisiae (13)
Drosophila melanogaster (12)
Escherichia coli (11)
Oryza sativa (9)
Populus tremula x Populus alba (8)
Rattus norvegicus (6)
Picea glauca (5)
Pseudomonas aeruginosa (5)
Pinus pinaster (4)
Euphorbia esula (4)
Triticum aestivum (4)
Zea mays (4)
Gallus gallus (4)
Ursus americanus (3)
Tetrahymena thermophila (3)
Populus trichocarpa x Populus deltoides (3)
Populus euphratica (3)
Streptomyces coelicolor (3)
Solanum tuberosum (3)
Ovis aries (3)
Danio rerio (3)
Eukaryota (2)
Allium cepa (2)
Populus x canadensis (2)
Vitis vinifera (2)

Organisms

Mus musculus (13)
Homo sapiens (5)
Populus x canadensis (1)
Populus tremula x Populus alba (1)
human gut metagenome (1)
gut metagenome (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (469)
pride (195)
MetaboLights (58)
EGA (42)
ENA (29)
iProX (27)
MassIVE (14)
BioModels (5)
geo (4)
PeptideAtlas (3)
GNPS (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Cell culture (40)
Epithelial cell (20)
Brain (12)
Liver (10)
Permanent cell line cell (9)
Blood plasma (7)
Leaf (7)
Stem cell (7)
Whole body (7)
Lung (6)
B cell (5)
Cell suspension culture (5)
Fibroblast (4)
Plant cell (4)
Others (3)
Blood cell (3)
Embryonic stem cell (3)
HiPSC cell (3)
Kidney (3)
Macrophage (3)
Root (3)
Spleen (3)
T cell (3)
Testis (3)
Blood (2)
Blood platelet (2)
Blood serum (2)
Bone cell (2)
Bone marrow (2)
Colon (2)

Disease

Disease free (9)
Breast cancer (6)
Acute leukemia (5)
Osteosarcoma (5)
Normal (3)
Colon cancer (3)
Cervix carcinoma (3)
Parasitic infectious disease (3)
Alzheimer's disease (2)
Lung adenocarcinoma (2)
Lung small cell carcinoma (2)
Malignant neoplasm of ovary (2)
Obesity (2)
Oral cavity cancer (2)
Parasitic helminthiasis infectious disease (2)
Plasmodium falciparum malaria (2)
Stomach cancer (2)
Bladder cancer (1)
Colorectal cancer (1)
Colon carcinoma (1)
Acute promyelocytic leukemia (1)
Colorectal adenocarcinoma (1)
Prostate carcinoma (1)
Alopecia (1)
Aortic valve stenosis (1)
Brain cancer (1)
Cancer (1)
Cardiovascular system disease (1)
Cholangiocarcinoma (1)
Esophageal cancer (1)

Technology Type

Mass Spectrometry (195)
Shotgun proteomics (90)
Bottom-up proteomics (50)
Mass spectrometry (49)
Data-dependent acquisition (30)
Affinity purification coupled with mass spectrometry proteomics (19)
Gel-based experiment (19)
Data-independent acquisition (11)
Top-down proteomics (7)
SWATH MS (6)
Mass spectrometry assay (5)
NMR spectroscopy (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
HDMSE (2)
Immunopeptidomics (2)
Proteogenomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
AB SOLiD System 3.0 (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
MSE (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (6)
Illumina HiSeq 1500 (5)
Illumina HiSeq 2500 (5)
NextSeq 500 (5)
Q Exactive (4)
Illumina MiSeq (3)
MS:1000031 (3)
GenePix 4000B [Axon Instruments] (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Illumina HiSeq 4000 (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion Lumos (2)
Q Exactive HF-X (2)
ShARC (1)
Agilent 2100 (1)
454 GS 20 (1)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
ScanArray 5000 [PerkinElmer] (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Illumina Genome Analyzer IIx (1)
Ion Torrent Proton (1)
Illumina NovaSeq 6000 (1)
LTQ (1)
LTQ Orbitrap Velos (1)
LTQ XL ETD (1)
Orbitrap Exploris 240 (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
Q Exactive Plus (1)

Publication Date

2010 (84)
2013 (67)
2014 (66)
2023 (48)
2022 (47)
2012 (46)
2024 (45)
2011 (45)
2026 (44)
2016 (42)
2015 (37)
2025 (33)
2021 (31)
2020 (26)
2008 (25)
2009 (21)
2019 (20)
2018 (19)
2007 (10)
2005 (6)
2017 (5)
2006 (4)
2004 (4)
2003 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
O43526 (1)
O88944 (1)
P00734 (1)
P00742 (1)
P12259 (1)
P29992 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:30769 (20)
CHEBI:15741 (19)
CHEBI:17568 (19)
CHEBI:15891 (17)
CHEBI:16704 (17)
CHEBI:16708 (17)
CHEBI:16737 (17)
CHEBI:17596 (17)
CHEBI:7916 (17)
CHEBI:32816 (16)
CHEBI:16335 (15)
CHEBI:16449 (15)
CHEBI:16919 (15)
CHEBI:17368 (15)
CHEBI:17822 (15)
CHEBI:15422 (1)
CHEBI:15996 (1)
CHEBI:16595 (1)
CHEBI:16749 (1)
CHEBI:17526 (1)
CHEBI:17552 (1)
CHEBI:18348 (1)
CHEBI:18420 (1)
CHEBI:25107 (1)
CHEBI:30111 (1)
CHEBI:38309 (1)
CHEBI:38322 (1)
CHEBI:43000 (1)
CHEBI:5235 (1)
CHEBI:9574 (1)

Metabolite Name

Uracil (11)
Adenine (10)
Citric acid (10)
Inosine (10)
Adenosine (9)
Guanosine (9)
Creatinine (8)
Hypoxanthine (8)
Taurine (8)
Uridine (8)
Xanthine (8)
Adenine (7)
Alanine (7)
Azelaic acid (7)
Creatine (7)
Creatinine (7)
Cytidine (7)
Glycine (7)
Guanine (7)
Kynurenic acid (7)
L-Asparagine (7)
Sucrose (7)
Acetylcholine (6)
Betaine (6)
Choline (6)
Genistein (6)
Glycocholic acid (6)
Jasmonic acid (6)
L-Serine (6)
L-Tyrosine (6)

First Public Date

2014 (9)
2025 (5)
2024 (4)
2015 (3)
2026 (2)
2021 (2)
2018 (2)
2023 (1)
2022 (1)

Modelling Approach

Ordinary differential equation model (4)
Constraint-based model (1)

Lab affiliation

Beijing proteome research center (3)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Genomics Research Center, Academia Sinica, Taipei, 11529 Taiwan (3)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (3)
NICM HRI, Western Sydney University (3)
Department of Emergency Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (2)
Department of Infectious Diseases, University Hospital Zurich, University of Zurich, Zurich, Switzerland (2)
Department of Medical Biotechnology and Laboratory Sciences, College of Medicine, Chang Gung University, Taiwan (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)
Division of Internal Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (2)
Ottawa Hospital Research Institute (2)
Peking Union Medical College (2)
Roswell Park Cancer Center Buffalo, NY, USA (2)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (2)
1. Graduate Institute of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan 33302, Taiwan. 2. Molecular Medicine Research Center, Chang Gung University, Taoyuan 33302, Taiwan. 3. Department of Otolaryngology-Head and Neck Surgery, Chang Gung Memorial Hospital, Linkou 33305, Taiwan. 4. Research Center for Food and Cosmetic Safety, College of Human Ecology, Chang Gung University of Science and Technology, Taoyuan 33302, Taiwan. (1)
1. Victor Chang Cardiac Research Institute, Darlinghurst, NSW, 2010 2. St Vincent’s Hospital, Darlinghurst, NSW, 2010 3. University of New South Wales Sydney, Kensington, NSW, 2052 (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China 3.Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1.UCSF Diabetes Center, CA, 94143, USA 2.Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, CA, 94143, USA 3.Department of Cell and Tissue Biology, University of California, San Francisco, CA94143, USA (1)
1Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA (1)
Aix Marseille Univ, CNRS, BIP, UMR7281, IMM, FR3479 (1)
Associate Professor of Chemistry, University of California, Riverside (1)
Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， Beijing 102206 P.R. China. (1)
Biology Department, Brookhaven National Laboratory, Upton, NY 11973, USA (1)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Breast Center, Baylor College of Medicine, Houston, TX US (1)
Cancer Institute, Fudan University Shanghai Cancer Center (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (286)
RNA-seq of coding RNA (49)
Unknown experiment type (39)
ChIP-seq (21)
Comparative genomic hybridization by array (11)
ChIP-chip by tiling array (8)
Other (8)
Methylation profiling by array (8)
ChIP-chip by array (6)
ATAC-seq (5)
RNA-seq of non coding RNA (5)
DNA-seq (3)
Methylation profiling by high throughput sequencing (3)
High-throughput sequencing (2)
Genotyping by array (2)
RIP-seq (2)
MicroRNA profiling by array (2)
Transcription profiling by SAGE (1)
CLIP-Seq (1)
Plant - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Ribo-seq (1)
Single nucleus RNA sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (1034)
2023 (945)
2025 (916)
2021 (881)
2024 (799)
2020 (708)
2019 (543)
2018 (460)
2016 (432)
2017 (401)
2015 (399)
2014 (325)
2013 (234)
2010 (178)
2012 (170)
2011 (156)
2026 (134)
2009 (87)
2008 (74)
2007 (38)
2006 (26)
2005 (22)
2004 (15)
2002 (10)
2003 (8)
2000 (7)
1999 (4)
1998 (3)
1997 (2)
2001 (1)

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Human nasopharyngeal carcinoma

To uncover the oncogenic pathways of nasopharyngeal carcinoma, gene expression profiles of primary NPC cell strains and NPC-derived cell lines were conducted and analyzed in depth. Keywords: Oncogenesis Gene expression profiles of 9 primary NPC cell strains and 5 NPC-derived cell lines were analyz...

ORGANISM(S): Homo sapiens

2010-05-15 | E-GEOD-14262 | biostudies-arrayexpress

Protective effect of Qing Hua Chang Yin (QHCY) on ulcerative colitis

The goal of this study is to compare the differently expressed genes in colon tissue of Control and DSS induced chronic colitis mouse model with or without Qing Hua Chang Yin (QHCY) treatment. The DSS induced chronic colitis mouse model were randomly divided into 3 groups: Model, Model + QHCY and Mo...

ORGANISM(S): Mus musculus

2025-05-01 | GSE231888 | GEO

Intra-locked G-quadruplex structures formed by irregular DNA G-rich motifs.

Not available

S-EPMC7102960 | biostudies-literature

Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Gastrodia elata Blume (Orchidaceae) is an important Chinese medicine with several functional components. In the life cycle of G. elata, the orchid develops a symbiotic relationship with two compatible mycorrhizal fungi Mycena spp. and Armillaria mellea during seed germination to form vegetative prop...

ORGANISM(S): Gastrodia elata

2016-08-23 | E-GEOD-73633 | biostudies-arrayexpress

Characteristics of ischemic stroke and intracranial hemorrhage in patients with nephrotic syndrome.

Not available

S-EPMC8178873 | biostudies-literature

Protective effect of Qing Hua Chang Yin (QHCY) on ulcerative colitis

PRJNA970066 | ENA

Ketoanalogues Supplemental Low Protein Diet Safely Decreases Short-Term Risk of Dialysis among CKD Stage 4 Patients.

Not available

S-EPMC9571353 | biostudies-literature

Hepatitis G virus infection in patients with chronic non-A-E hepatitis.

Not available