Chang Y S YS - OmicsDI

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Unknown (293)
Transcriptomics (26)
Genomics (3)
Metabolomics (3)
Proteomics (2)

Organisms

Homo sapiens (11)
Mus musculus (5)
Corynebacterium glutamicum (3)
Picea glauca (3)
Arabidopsis thaliana (2)
Populus simonii (1)
Populus alba (1)
Picea abies (1)
Hordeum vulgare (1)
Corynebacterium glutamicum ATCC 13032 (1)
Rattus norvegicus (1)
Mycobacterium tuberculosis H37Rv (1)

Repository

biostudies-arrayexpress (29)
MetaboLights (3)
pride (2)

Tissue

Cell culture (1)
Root (1)

Technology Type

Mass spectrometry (3)
Mass Spectrometry (2)
Bottom-up proteomics (1)
Shotgun proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (2)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
Illumina HiSeq 2500 (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
MS Imaging - (1)

Publication Date

2014 (10)
2015 (5)
2013 (5)
2011 (4)
2026 (2)
2012 (2)
2017 (1)
2010 (1)
2024 (1)
2023 (1)
2019 (1)
2020 (1)

CHEBI ID

CHEBI:12962 (2)
CHEBI:15318 (2)
CHEBI:15354 (2)
CHEBI:15355 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15698 (2)
CHEBI:15721 (2)
CHEBI:15753 (2)
CHEBI:15756 (2)
CHEBI:15784 (2)
CHEBI:15859 (2)
CHEBI:16015 (2)
CHEBI:16040 (2)
CHEBI:16108 (2)
CHEBI:16264 (2)
CHEBI:16265 (2)
CHEBI:16335 (2)
CHEBI:16436 (2)
CHEBI:16449 (2)
CHEBI:16450 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16742 (2)
CHEBI:16750 (2)
CHEBI:16865 (2)
CHEBI:16919 (2)
CHEBI:16988 (2)
CHEBI:17050 (2)

Metabolite Name

5'-deoxyadenosine (2)
D-glucosamine 6-phosphate (2)
L-pipecolic acid (2)
((4r)-4-((3r,5s,7r,9s,10s,12s,13r,14s,17r)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthren-17-yl)pentanoyl)glycylglycine (1)
(+)-alpha-tocopherol (1)
(+)-chlorpheniramine (1)
(+-)5,6-DHET (1)
(-)-caryophyllene oxide (1)
(-)-cotinine (1)
(2e,4e)-12-hydroxy-13-(hydroxymethyl)-3,5,7-trimethyltetradeca-2,4-dienedioic acid (1)
(2r,3r,4r,6ar,6bs,8as,11r,12r,12as,14br)-2,3,12-trihydroxy-4,6a,6b,11,12,14b-hexamethyl-8a-[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxycarbonyl-1,2,3,4a,5,6,7,8,9,10,11,12a,14,14a-tetradecahydropicene-4-carboxylic acid (1)
(2s,3r,4s,6ar,6bs,8as,12as,14br)-2-acetyloxy-8a-[(2s,3r,4s,5s,6r)-6-[[(2r,3r,4r,5s,6r)-3,4-dihydroxy-6-(hydroxymethyl)-5-[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxymethyl]-4,5-dihydroxy-3-[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxycarbonyl-3-hydroxy-4,6a,6b,11,11,14b-hexamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicene-4-carboxylic acid (1)
(3S)-3-hydroxy-3-methylglutaryl-CoA (1)
(3r,5s,7r,9s,10s,12s,13r,14s,17r)-17-((2r)-7-hydroxy-6-methylheptan-2-yl)-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthrene-3,7,12-triol (1)
(3r,7r,9s,10s,12s,13r,14s,17r)-17-((2r)-6,7-dihydroxy-6-methylheptan-2-yl)-10,13-dimethylhexadecahydro-1h-cyclopenta[a]phenanthrene-3,7,12-triol (1)
(9z,12z,15z-octadecatrienoyl) coenzyme a (1)
(N(omega)-L-arginino)succinic acid (1)
(R)-3-(4-hydroxyphenyl)lactic acid (1)
(e,2s,3r)-5-[3-hydroxy-2-(hydroxymethyl)phenyl]pent-4-ene-2,3-diol (1)
(e,2s,3r,4r,5s)-4-acetyloxy-2-amino-3,5,14-trihydroxyicos-6-enoic acid (1)
(r)-butyrylcarnitine (1)
(z)-2,6-dimethyl-7-(4-methyl-5-oxooxolan-2-yl)-3-[[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxymethyl]hept-5-enoic acid (1)
.gamma.-aminobutyric acid (1)
1'-hydroxymidazolam beta-d-glucuronide (1)
1,2-benzenedicarboxylic acid (1)
1,2-bis(o-octanoyl)-sn-glycerylphophorylcholine (1)
1,2-di-(9z,12z,15z-octadecatrienoyl)-sn-glycero-3-phosphocholine (1)
1,2-diamino-2-methylpropane (1)
1,2-dihexadecanoyl-sn-glycerol (1)
1,2-dilinoleoylglycerol (1)

Study type

Transcription profiling by array (20)
ChIP-seq (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2022 (39)
2023 (32)
2025 (30)
2020 (30)
2021 (27)
2024 (24)
2015 (21)
2017 (17)
2014 (17)
2018 (17)
2016 (14)
2013 (12)
2019 (12)
2011 (10)
2012 (8)
2026 (6)
2010 (3)
2008 (3)

Lab affiliation

Biotechnology Center, National Chung-Hsing University, Taichung 402, Taiwan (1)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (South Korea) (1)

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Combination of Epithelial Growth Factor Receptor Blockers and CDK4/6 Inhibitor for Nasopharyngeal Carcinoma Treatment.

Not available

S-EPMC8231497 | biostudies-literature

Transcriptome sequencing for cancer stem cell properties in MCF-7 cells with knocked down CD24

CD24 is the one of cell surface protein that anchored via glycosyl phosphatidylinositol that links to cell surface and modulates growth and differentiation signal many of cell types. A small population of cells, namely M-bM-^@M-^XCancer Stem Cells (CSCs)M-bM-^@M-^Y, charges highly aggressive and met...

ORGANISM(S): Homo sapiens

2014-10-15 | E-GEOD-61917 | biostudies-arrayexpress

Pupylated proteins in Corynebacterium glutamicum revealed by MudPIT analysis

In a manner similar to ubiquitin, the prokaryotic ubiquitin-like protein (Pup) has been shown to target proteins for degradation via the proteasome in mycobacteria. However, not all actinobacteria possessing the Pup protein also harbor a proteasome, suggesting fates for pupylated proteins other than...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2014-06-24 | E-GEOD-48038 | biostudies-arrayexpress

Peroxisome Proliferator-Activated Receptor γ Level Contributes to Structural Integrity and Component Production of Elastic Fibers in the Aorta.

Not available

S-EPMC4865434 | biostudies-literature

Does Surgery Reduce the Risk of Complications Among Patients with Multiple Rib Fractures? A Meta-analysis.

Not available

S-EPMC6345288 | biostudies-literature

Impaired Chromatin Remodeling Predicts Better Survival to Modified Gemcitabine and S-1 plus Nivolumab in Advanced Biliary Tract Cancer: A Phase II T1219 Study.

Not available

S-EPMC9527499 | biostudies-literature

Cross-Sectional Analysis of Outer Retinal Tubulation in Inherited Retinal Diseases: A Multicenter Study.

Not available

S-EPMC11634660 | biostudies-literature

Identification of high temperature and daylength responsive genes in barley

High temperature influences plant development and can reduce crop yields. We used the Agilent Barley Gene Expression Microarray to identify high temperature responsive genes in cereals. In temperate cereals, such as wheat and barley, high temperature results in rapid progression through reproductive...

ORGANISM(S): Hordeum vulgare

2012-04-03 | E-GEOD-33938 | biostudies-arrayexpress

Global Gene Expression of hematopoietic stem cells expressing endogenous NrasG12D/G12D, NrasG12D/+, Nras+/+

Oncogenic NRAS mutations are frequently identified in human myeloid leukemias. In mice, expression of endogenous oncogenic Nras (NrasG12D/+) in hematopoietic cells leads to expansion of myeloid progenitors, increased long-term reconstitution of bone marrow cells, and a chronic myeloproliferative neo...

ORGANISM(S): Mus musculus

2013-05-29 | E-GEOD-46948 | biostudies-arrayexpress

Alcohol Drinking Obliterates the Inverse Association Between Serum Retinol and Risk of Head and Neck Cancer.

Not available

S-EPMC4504644 | biostudies-literature

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