Chaudhuri R R - OmicsDI

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Unknown (484)
Proteomics (18)
Genomics (17)
Transcriptomics (12)
Metabolomics (2)

Organisms

Homo sapiens (25)
Mus musculus (9)
Campylobacter jejuni (2)
Salmonella enterica (1)
Geobacter sulfurreducens (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (1)
Bacteria (1)
Klebsiella pneumoniae (1)
Klebsiella pneumoniae ATCC BAA-2146 (1)
Rattus norvegicus (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. D23580 (1)
Xenopus laevis (1)

Organisms

Escherichia coli str. K-12 substr. MG1655 (1)
Campylobacter jejuni (1)

Repository

biostudies-arrayexpress (14)
EGA (13)
pride (13)
ENA (3)
MassIVE (2)
MetaboLights (2)
PeptideAtlas (2)
geo (1)

Tissue

Others (2)
Cell culture (2)
Epithelial cell (2)
Skeletal muscle (2)
Adipose tissue (1)
Blood (1)
Blood cell (1)
Blood plasma (1)
Early embryonic cell (1)
Egg (1)
Fat cell (1)
Heart (1)
Hepatocyte (1)
Liver (1)
White adipose tissue (1)

Disease

Acinetobacter infectious disease (1)
Breast cancer (1)
COVID-19 (1)
Cervix carcinoma (1)
Insulin insensitivity (1)
Non-alcoholic steatohepatitis (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (13)
Shotgun proteomics (6)
Bottom-up proteomics (3)
Illumina HiSeq 2000, Illumina_2.5M (2)
Mass spectrometry (2)
SWATH MS (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive (3)
LTQ Orbitrap Velos (2)
Axon- GenePix4000B (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (7)
2010 (5)
2023 (4)
2019 (3)
2025 (3)
2011 (2)
2008 (2)
2018 (2)
2013 (1)
2009 (1)
2006 (1)
2017 (1)
2026 (1)
2016 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A0A0MR66 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0MZ66 (2)
A1L170 (2)
A1X283 (2)
A3KN83 (2)
A5A3E0 (2)
A5YM69 (2)
A6NFI3 (2)
A6NMQ1 (2)
A7E2V4 (2)
A8CG34 (2)
A8MQ03 (2)
A9IYQ1 (2)
B3KML9 (2)
B4DKM5 (2)
B4DPR2 (2)
B4DRV9 (2)
B4DY08 (2)
B4E3A4 (2)
B4E3H1 (2)
B5MBZ0 (2)
B5MCI0 (2)

CHEBI ID

CHEBI:116314 (1)
CHEBI:11805 (1)
CHEBI:132983 (1)
CHEBI:132994 (1)
CHEBI:133032 (1)
CHEBI:133046 (1)
CHEBI:133065 (1)
CHEBI:133136 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133172 (1)
CHEBI:133185 (1)
CHEBI:133186 (1)
CHEBI:133469 (1)
CHEBI:133523 (1)
CHEBI:133533 (1)
CHEBI:133560 (1)
CHEBI:133583 (1)
CHEBI:133606 (1)
CHEBI:133647 (1)
CHEBI:133649 (1)
CHEBI:133672 (1)
CHEBI:133675 (1)
CHEBI:133677 (1)
CHEBI:142245 (1)
CHEBI:14336 (1)
CHEBI:15354 (1)
CHEBI:15356 (1)
CHEBI:15428 (1)

Metabolite Name

1,3-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPC (20:4n6) (1)
1-arachidonoyl-GPI (20:4) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2) (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-GPC (18:1) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4) (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-2-oleoyl-GPI (16:0/18:1) (1)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1) (1)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (1)

First Public Date

2025 (1)
2014 (1)
2013 (1)

Classification

bacteria (2)

Study type

Transcription profiling by array (8)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2022 (58)
2025 (56)
2023 (53)
2021 (52)
2024 (43)
2020 (37)
2018 (27)
2019 (26)
2015 (19)
2017 (18)
2014 (14)
2011 (13)
2026 (13)
2016 (13)
2013 (12)
2012 (11)
2010 (9)
2008 (7)
2009 (5)
2006 (5)
2007 (2)
2005 (1)
2004 (1)
2000 (1)
1997 (1)
1994 (1)

Lab affiliation

Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, University of Sydney, Camperdown, NSW, Australia (2)
The University of Sydney (2)
Associate Professor, Department of Laboratory Mediciene, UCSF (1)
CVRTI, University of Utah (1)
Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47907, USA Purdue Institute for Drug Discovery, Purdue University, 720 Clinic Drive, West Lafayette, IN 47907, USA Purdue Institute for Cancer Research, Purdue University, 201 S. University Street, West Lafayette, IN 47907, USA (1)
Department of Medical Oncology, University Medical Center Groningen, University of Groningen, the Netherlands, Hanzeplein 1, 9713GZ, Groningen, the Netherlands (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Molecular Genetics Laboratory, Infection and Immunology Division, Translational Health Science and Technology Institute, India (1)
Professor of Microbial Pathogenesis Institute of Integrative Biology Room 308, Biosciences Building, University of Liverpool Crown Street, Liverpool L69 7ZB, United Kingdom (1)
The Kinghorn Cancer Center, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia. St. Vincent's Clinical School, Faculty of Medicine, UNSW, Darlinghurst, NSW, Australia (1)
The Ohio State University (1)

Tags

pathogen:bacterium (2)
pathogen (2)
xref:PubMed:21816880 (1)
xref:PubMed:19767843 (1)

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Integrative immunoinformatics for Mycobacterial diseases in R platform.

Not available

S-EPMC3933634 | biostudies-literature

Genentech Colon Cancer Screen

Identifying and understanding changes in cancer genomes is essential for the development of targeted therapeutics. Here we analyse systematically more than 70 pairs of primary human colon tumours by applying next-generation sequencing to characterize their exomes, transcriptomes and copy-number alte...

EGAS00001000288 | EGA

[E-MTAB-706] Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni

RNA-seq analysis of the transcriptome of wild type C.jejuni NCTC11168, and of an rpoN mutant of the same strain, both grown in vitro. ArrayExpress Release Date: 2011-06-14 Publication Title: Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni Publication Author List: Roy R. Ch...

ORGANISM(S): Campylobacter jejuni

2011-07-14 | GSE30621 | GEO

Recurrent R-spondin fusions in colon cancer.

Not available

S-EPMC3690621 | biostudies-literature

Volume expansion and TRPV4 activation regulate stem cell fate in three-dimensional microenvironments.

Not available

S-EPMC6355972 | biostudies-literature

A review of Rheocricotopus (Psilocricotopus) chalybeatus species group from China, with the description of three new species (Diptera, Chironomidae).

Not available

S-EPMC3978914 | biostudies-literature

Colon_Illumina_2.5M_Controls - samples