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Unknown
(258447)
Proteomics
(4832)
Transcriptomics
(3031)
Genomics
(1474)
Metabolomics
(378)
Multiomics
(30)
Genomic
(24)
Other
(14)
Models
(10)
Clinical
(1)
Methylation profiling
(1)
Organisms
Homo sapiens
(3870)
Mus musculus
(1768)
Arabidopsis thaliana
(253)
Rattus norvegicus
(235)
Drosophila melanogaster
(116)
Saccharomyces cerevisiae
(113)
Escherichia coli
(109)
Oryza sativa
(94)
Caenorhabditis elegans
(85)
Danio rerio
(55)
Zea mays
(48)
Gallus gallus
(46)
Schizosaccharomyces pombe
(35)
Glycine max
(33)
Bos taurus
(33)
Triticum aestivum
(33)
Sus scrofa
(29)
Candida albicans
(21)
Oryza sativa Japonica Group
(19)
Macaca mulatta
(16)
Gossypium hirsutum
(11)
Canis lupus familiaris
(11)
Apostichopus japonicus
(9)
Hordeum vulgare
(9)
Drosophila simulans
(8)
Oryza sativa Indica Group
(7)
Apis mellifera
(7)
Citrus sinensis
(7)
Drosophila yakuba
(6)
Streptomyces coelicolor
(6)
Organisms
Homo sapiens
(260)
Mus musculus
(207)
Arabidopsis thaliana
(30)
Drosophila melanogaster
(14)
Saccharomyces cerevisiae
(8)
Caenorhabditis elegans
(7)
Rattus norvegicus
(6)
Panax notoginseng
(5)
Trichoderma reesei
(4)
Danio rerio
(4)
Aphelocoma coerulescens
(3)
Plasmodium falciparum 3D7
(3)
Scutellaria baicalensis
(3)
Pantoea agglomerans
(3)
Oryza sativa
(3)
Zea mays
(3)
Taxus cuspidata
(2)
Aix galericulata
(2)
Campeiostachys kamoji
(2)
Saussurea bogedaensis
(2)
Apostichopus japonicus
(2)
Globisporangium carolinianum
(2)
Brassica napus
(2)
Lacticaseibacillus paracasei
(2)
Gossypium hirsutum
(2)
synthetic construct
(2)
Halomicronema hongdechloris C2206
(1)
Gobio huanghensis
(1)
Ardisia perreticulata
(1)
Agrobacterium sp. 31749
(1)
Repository
biostudies-arrayexpress
(3325)
pride
(2980)
iProX
(1372)
ENA
(828)
MetaboLights
(329)
MassIVE
(241)
EGA
(227)
PeptideAtlas
(117)
NODE
(93)
geo
(66)
jPOST
(46)
PAXDB
(40)
GNPS
(38)
dbGaP
(24)
PanoramaPublic
(19)
GPMDB
(12)
PMR
(9)
LINCS
(3)
Cell Collective
(1)
Tissue
Liver
(110)
Lung
(86)
Blood
(58)
Colon
(34)
Skin
(33)
Embryo
(28)
Mixture
(5)
Leaf
(4)
Pancreas
(4)
Root
(4)
Solvent
(4)
Cell line
(3)
Tumor graft
(3)
Breast
(2)
Decidua
(2)
Uterus
(2)
Vagina
(2)
Adrenal gland
(1)
Ascites
(1)
BALF
(1)
Cell-free DNA
(1)
Cerebrospinal fluid
(1)
Cheek mass
(1)
Flora
(1)
Ileocecal mass
(1)
Inferior turbinate
(1)
Intestine
(1)
Lymph node
(1)
PBMC
(1)
Splenic B cells
(1)
Disease
Prostate cancer
(8)
Alzheimer's disease
(8)
Liver cancer
(6)
Astrocytoma
(1)
Congestive heart failure
(1)
HPV positive
(1)
Endometrioid carcinoma
(1)
Ischemic
(1)
Clear cell renal cell carcinoma
(1)
Hepatocellular carcinoma-non tumorous region
(1)
Colorectal polyp
(1)
Embryonic lethal at day 8.5 to 9.5
(1)
Diffuse large B-cell lymphoma
(1)
Metastatic prostate cancer
(1)
Infiltrating ductal carcinoma
(1)
Ductal breast cancer
(1)
Dukes D primary colon cancer
(1)
Pancreatic tumor
(1)
Colon cancer metastasis
(1)
None- acute control
(1)
Polycythemia vera
(1)
Leukemia
(1)
Small cell lung carcinoma
(1)
Serous ovarian cancer
(1)
Midgut carcinoid liver metastasis
(1)
Megakaryoblastic leukemia
(1)
Benign adenoma
(1)
Non-small cell lung cancer
(1)
None- Acute Control
(1)
Normal
(1)
Technology Type
Mass Spectrometry
(2980)
Mass spectrometry
(235)
Mass spectrometry assay
(86)
Illumina HiSeq 2000
(13)
NMR spectroscopy
(8)
Chemiluminescence
(3)
ELISA
(3)
ILLUMINA, Illumina HiSeq 2500
(2)
Illumina HiSeq 2500
(2)
AB 5500 Genetic Analyzer, Ion Torrent PGM
(1)
Affymetrix_U133v2, Illumina HiSeq 2000
(1)
CAPILLARY, AB 3730xL Genetic Analyzer
(1)
HumanOmniExpress-12 v1.1 BeadChip-GenCall
(1)
ILLUMINA, Illumina HiSeq 2000
(1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500
(1)
Illumina 450K
(1)
Illumina Genome Analyzer II
(1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx
(1)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA)
(1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx
(1)
Illumina HiSeq 2000, Affymetrix SNP 6.0
(1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA)
(1)
Illumina HiSeq 2000, Illumina HumanOmni2-5M-8v1-1_B
(1)
Illumina HiSeq 2000, Illumina HumanOmni2-5_8v1_A
(1)
Illumina HiSeq 2000, unknown
(1)
Illumina HiSeq 2500, ILLUMINA
(1)
Life Tech - Solid
(1)
NextSeq 550, ILLUMINA
(1)
ZCall, HumanExome_12v1.1_A -GenCall
(1)
NMR spectroscopy assay
(1)
Instrument Platform
Illumina NovaSeq 6000
(60)
Illumina HiSeq 2000
(60)
Illumina HiSeq 2500
(48)
Illumina HiSeq 4000
(24)
NextSeq 500
(13)
BGISEQ-500
(12)
NextSeq 550
(8)
Axon GenePix 4000B scanning hardware
(7)
Illumina Genome Analyzer IIx
(5)
Illumina Genome Analyzer II
(5)
HiSeq X Ten
(5)
Illumina HiSeq 1000
(4)
Illumina MiSeq
(4)
Illumina Genome Analyzer
(3)
Illumina NovaSeq X
(3)
AB SOLiD 5500
(2)
High resolution C. scanner
(2)
Windows 7
(2)
Scanning hardware
(2)
NextSeq 2000
(2)
DNBSEQ-T7
(2)
Illumina HiSeq 2000 platform
(1)
Agilent Bioanalyzer 2100 (or TapeStation); Qubit 4 Fluorometer (Thermo Fisher Scientific)
(1)
NanoDrop ND-1000 spectrophotometer
(1)
Qsep400
(1)
Qubit fluorometer
(1)
N/C
(1)
BD FACSAria™ III
(1)
Maxwell® AS2000 instrument
(1)
BGIseq500
(1)
Publication Date
2025
(741)
2022
(669)
2023
(582)
2026
(556)
2013
(551)
2014
(508)
2024
(503)
2021
(485)
2015
(442)
2012
(429)
2010
(388)
2011
(340)
2020
(323)
2016
(315)
2019
(298)
2018
(199)
2017
(145)
2008
(123)
2009
(118)
2007
(85)
2005
(76)
2006
(35)
2004
(22)
2003
(6)
2027
(1)
UNIPROT ID/AC
1433B_HUMAN
(29)
1433E_HUMAN
(29)
1433F_HUMAN
(29)
1433G_HUMAN
(29)
1433S_HUMAN
(29)
1433T_HUMAN
(29)
1433Z_HUMAN
(29)
2A5A_HUMAN
(29)
2A5B_HUMAN
(29)
2A5D_HUMAN
(29)
2A5E_HUMAN
(29)
2A5G_HUMAN
(29)
2AAA_HUMAN
(29)
2AAB_HUMAN
(29)
2ABA_HUMAN
(29)
2ABD_HUMAN
(29)
3BP1_HUMAN
(29)
3HAO_HUMAN
(29)
3HIDH_HUMAN
(29)
3MG_HUMAN
(29)
41_HUMAN
(29)
4EBP1_HUMAN
(29)
4EBP2_HUMAN
(29)
4F2_HUMAN
(29)
5NT3A_HUMAN
(29)
5NT3B_HUMAN
(29)
5NTC_HUMAN
(29)
5NTD_HUMAN
(29)
6PGD_HUMAN
(29)
6PGL_HUMAN
(29)
ENSEMBL ID
ENSG00000170477
(101)
ENSG00000147251
(17)
ENSG00000247315
(9)
ENSG00000229353
(6)
ENSG00000214897
(2)
ENSG00000204131
(1)
CHEBI ID
CHEBI:30769
(77)
CHEBI:16704
(68)
CHEBI:17368
(67)
CHEBI:16335
(65)
CHEBI:17154
(63)
CHEBI:17596
(61)
CHEBI:15741
(59)
CHEBI:16708
(59)
CHEBI:17568
(58)
CHEBI:17895
(57)
CHEBI:16919
(55)
CHEBI:16750
(54)
CHEBI:15891
(53)
CHEBI:17295
(52)
CHEBI:17562
(52)
CHEBI:15756
(51)
CHEBI:16828
(51)
CHEBI:6650
(51)
CHEBI:7916
(51)
CHEBI:15354
(50)
CHEBI:15428
(49)
CHEBI:16015
(49)
CHEBI:18012
(49)
CHEBI:30915
(49)
CHEBI:16027
(48)
CHEBI:16235
(47)
CHEBI:16411
(47)
CHEBI:17750
(47)
CHEBI:17821
(47)
CHEBI:18257
(47)
Metabolite Name
Hypoxanthine
(76)
Creatine
(72)
Adenosine
(67)
Adenine
(64)
Uridine
(64)
Inosine
(63)
Uracil
(62)
Cytidine
(58)
L-Tyrosine
(57)
Choline
(54)
Guanine
(54)
Xanthine
(53)
Betaine
(52)
L-Phenylalanine
(52)
Taurine
(52)
Creatinine
(51)
Guanosine
(51)
Thymine
(51)
Cytosine
(49)
L-Histidine
(49)
L-Tryptophan
(49)
L-Glutamine
(48)
Xanthosine
(47)
Citric acid
(45)
Thymidine
(45)
L-Arginine
(44)
Riboflavin
(44)
Indole
(42)
L-Methionine
(42)
Ornithine
(42)
First Public Date
2026
(126)
2023
(102)
2025
(90)
2024
(78)
2014
(77)
2021
(62)
2020
(59)
2022
(57)
2019
(55)
2017
(32)
2018
(30)
2013
(27)
2015
(19)
2016
(14)
Study status
Completed
(1)
Lab affiliation
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720
(40)
Huazhong Agricultural University
(11)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA
(9)
Zhejiang University
(9)
Institute of Chemistry, Academia Sinica
(8)
University of Florida
(8)
University of Minnesota
(8)
Xiamen University
(8)
Bioplatforms Australia
(7)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany
(7)
Michigan State University
(7)
Peking University
(7)
University of Minnesota at Twin Cities
(7)
Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA
(6)
Guangzhou Medical University
(6)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA
(6)
Northwest University
(6)
Shandong Normal University
(6)
St. Jude Children's Research Hospital
(6)
Univeristy of Georgia
(6)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China.
(5)
Department of Chemistry, Michigan State University
(5)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
(5)
Institute of Biophysics, Chinese Academy of Sciences
(5)
Institute of Chemistry, Academia Sinica, Taiwan
(5)
Max Delbrück Center for Molecular Medicine
(5)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences
(5)
Tsinghua University, China
(5)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center
(5)
University of Oxford
(5)
Tags
pathogen
(23)
pathogen:bacterium
(17)
xref:PubMed:30867593
(10)
xref:PubMed:42014869
(10)
xref:PubMed:37379838
(8)
xref:PubMed:37541212
(7)
xref:PubMed:38216737
(6)
xref:PubMed:36888599
(6)
xref:PubMed:42463951
(6)
xref:PubMed:35145225
(6)
xref:PubMed:23817021
(6)
xref:PubMed:39715683
(6)
xref:PubMed:32402250
(5)
xref:PubMed:33536439
(5)
xref:PubMed:41371963
(4)
xref:PubMed:41279170
(4)
xref:PubMed:38280848
(4)
xref:PubMed:20927104
(4)
xref:PubMed:42230634
(4)
xref:PubMed:37963072
(4)
xref:PubMed:29476152
(4)
xref:PubMed:37624915
(4)
xref:PubMed:15300251
(4)
xref:PubMed:16925838
(4)
xref:PubMed:39041412
(4)
xref:PubMed:35966596
(4)
xref:PubMed:29360641
(4)
xref:PubMed:32354235
(4)
xref:PubMed:38755149
(4)
xref:PubMed:40446216
(4)
Keyword
Colorectal liver metastasis
(1)
TACE (transarterial chemoembolization)
(1)
Classification
bacteria
(17)
protozoa
(4)
viruses
(2)
Modification
57.021464
(9)
15.994915
(8)
Not available
(6)
2x(15)N labeled L-lysine
(5)
4x(15)N labeled L-arginine
(5)
71.037114
(3)
N6
(3)
4-tetrahydrothiazine-3-carboxylic acid
(2)
0.984016
(1)
1.99407
(1)
10.008269
(1)
1x(15)N labeled L-leucine
(1)
3.98814
(1)
42.010565
(1)
6-dioxaoctanediamine derivatized cysteine
(1)
79.966331
(1)
8.014199
(1)
N6-dimethyl-L-lysine
(1)
Study type
Transcription profiling by array
(1841)
RNA-seq of coding RNA
(536)
ChIP-seq
(272)
RNA-seq of non coding RNA
(123)
Comparative genomic hybridization by array
(93)
Methylation profiling by high throughput sequencing
(69)
Unknown experiment type
(66)
Methylation profiling by array
(64)
Other
(37)
ChIP-chip by tiling array
(28)
RNA-seq of coding RNA from single cells
(20)
Genotyping by array
(18)
Transcription profiling by RT-PCR
(16)
RNA-seq of total RNA
(16)
DNA-seq
(15)
Proteomic profiling by array
(12)
ChIP-chip by array
(11)
MicroRNA profiling by array
(11)
Transcription profiling by SAGE
(9)
Transcription profiling by tiling array
(9)
RNAi profiling by array
(7)
ATAC-seq
(7)
Cell line - High-throughput sequencing
(6)
Plant - High-throughput sequencing
(5)
High-throughput sequencing
(4)
Animal - High-throughput sequencing
(4)
Human - Single-cell sequencing
(2)
Spatial transcriptomics by high-throughput sequencing
(2)
4C
(2)
Hi-C
(2)
Release Date
2025
(36721)
2022
(34036)
2023
(30452)
2024
(29252)
2021
(26585)
2020
(19814)
2019
(14633)
2018
(12568)
2017
(11117)
2016
(9473)
2015
(7762)
2014
(6103)
2026
(5408)
2013
(4215)
2012
(3414)
2011
(2741)
2010
(2214)
2009
(1587)
2008
(1226)
2007
(700)
2006
(479)
2005
(408)
2004
(219)
2003
(142)
2002
(114)
2001
(95)
2000
(88)
1999
(68)
1998
(63)
1997
(31)
Location
Taiwan
(1)
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Pythium acanthicum strain:Chen 432
Pythium acanthicum strain:Chen 432 Genome sequencing
PRJNA1010494
|
ENA
Cite
Lacticaseibacillus paracasei strain:Chen
Lacticaseibacillus paracasei strain:Chen Genome sequencing
PRJNA512587
|
ENA
Cite
Liver hydatid disease project of Chen xinhua
Liver hydatid disease project of Chen xinhua
PRJEB9109
|
ENA
Cite
CHEN WTPDX WES - samples
WES files for CHEN WTPDX paper titled "Forty-Five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor"
EGAD00001004506
|
EGA
Cite
CHEN WTPDX RNASEQ - samples
RNAseq files for CHEN WTPDX RNASEQ paper titled "Forty-Five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor"
EGAD00001004507
|
EGA
Cite
Eriocheir sinensis breed:Chen
Eriocheir sinensis breed:Chen Raw sequence reads
PRJNA287297
|
ENA
Cite
Terapon jarbua isolate:TJ-2025-Chen
Terapon jarbua isolate:TJ-2025-Chen Genome sequencing
PRJNA1473037
|
ENA
Cite
Two new species of the bamboo-feeding genus
Bambusicaliscelis
Chen & Zhang, 2011 from China (Hemiptera, Fulgoromorpha, Caliscelidae).
Not available
S-EPMC6072826
|
biostudies-literature
Cite
Draft genome sequence data of
Pythium cedri
Chen 4, the causal pathogen of deodar cedar root rot.
Not available
S-EPMC11424785
|
biostudies-literature
Cite
A new extended Chen distribution for modelling COVID-19 data.
Not available
S-EPMC11698366
|
biostudies-literature
Cite
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