Chen Allen A - OmicsDI

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Unknown (906)
Transcriptomics (8)
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Mus musculus (5)
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Trypanosoma brucei (1)

Organisms

Trichiurus japonicus (1)

Repository

biostudies-arrayexpress (9)
pride (5)
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Technology Type

Mass Spectrometry (5)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Shotgun proteomics (2)
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CHEBI ID

CHEBI:15611 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:15940 (2)
CHEBI:16113 (2)
CHEBI:16196 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16750 (2)
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CHEBI:133357 (1)
CHEBI:133381 (1)

Metabolite Name

Benzoate (2)
Cholesterol (2)
(9E)-Octadecenoic Acid (1)
(S)-2,3,4,5-tetrahydropyridine-2-carboxylate (1)
(S)-5-Amino-3-oxohexanoate (1)
1,3,8-trihydroxy-4-methyl-2,7-diprenylxanthone (1)
1-Aminocyclopropanecarboxylic acid (1)
1-Methylnicotinamide (1)
17-Hydroxypregnenolone sulfate (1)
2-Hydroxy-2-ethylsuccinic acid (1)
2-Hydroxybutyric acid (1)
25-Hydroxycholesterol (1)
3-(2-Hydroxyphenyl)propanoic acid (1)
4-Hydroxyphenylacetaldehyde (1)
4-Pyridoxic acid (1)
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AMP (1)
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CMP (1)
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Carbanilide (1)
Cellobiose (1)
Citrate (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

First Public Date

2025 (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (6)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (120)
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2008 (5)
2006 (4)
2002 (2)
2007 (1)
2005 (1)
2004 (1)
1997 (1)

Lab affiliation

Agios Pharmaceuticals 88 Sidney Street Cambridge MA 02139 USA (1)
CMU, University of Geneva (1)
Department of Biochemistry, University of Oxford (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel. (1)
Department of Molecular Medicine, The Scripps Research Institute (1)

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LC-HRMS Metabolomics for Untargeted Diagnostic Screening in Clinical Laboratories: A Feasibility Study

Today's high-resolution mass spectrometers (HRMS) allow bioanalysts to perform untargeted/global determinations that can reveal unexpected compounds or concentrations in a patient’s sample. This could be performed for preliminary diagnosis attempts when usual diagnostic processes and targeted ...

2019-06-06 | MTBLS476 | MetaboLights

Divergence of substrate specificity and function in the Escherichia coli hotdog-fold thioesterase paralogs YdiI and YbdB.

Not available

S-EPMC4116150 | biostudies-literature

Dose-intensive response-based chemotherapy and radiation therapy for children and adolescents with newly diagnosed intermediate-risk hodgkin lymphoma: a report from the Children's Oncology Group Study AHOD0031.

Not available

S-EPMC4220044 | biostudies-literature

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain.

Not available

S-EPMC10719114 | biostudies-literature

Thiele2011 - Genome-scale metabolic network of Salmonella Typhimurium (STM_v1_0)

Thiele2011 - Genome-scale metabolic network of Salmonella Typhimurium (STM_v1_0) This model is described in the article: A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. Thiele I, Hyduke DR, Steeb B, Fankam ...

2015-07-30 | MODEL1507180017 | BioModels

Repeated and Prolonged Temperature Anomalies Negate Symbiodiniaceae Genera Shuffling in the Coral Platygyra verweyi (Scleractinia; Merulinidae).

Not available

S-EPMC6517774 | biostudies-literature

Development of Novel Polymorphic Microsatellite Markers in Catch Bowl Coral, Isopora palifera (Scleractinia; Acroporidae) Using Next-generation Sequencing.

Not available

S-EPMC6517735 | biostudies-literature

Neuronal diversity and stereotypy at multiple scales through whole brain morphometry.

Not available

S-EPMC11599929 | biostudies-literature

Transcriptome Architecture of Adult Mouse Brain Revealed by Sparse Coding of Genome-Wide In Situ Hybridization Images.

Not available