Chen Chen C - OmicsDI

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Unknown (98581)
Proteomics (3261)
Transcriptomics (2686)
Genomics (613)
Metabolomics (386)
Models (33)
Multiomics (24)
Genomic (7)
Other (7)

Organisms

Homo sapiens (1867)
Mus musculus (932)
Arabidopsis thaliana (144)
Rattus norvegicus (138)
Drosophila melanogaster (76)
Caenorhabditis elegans (68)
Saccharomyces cerevisiae (40)
Danio rerio (39)
Schizosaccharomyces pombe (35)
Oryza sativa (31)
Zea mays (27)
Sus scrofa (26)
Gallus gallus (23)
Escherichia coli (19)
Glycine max (17)
Oryza sativa Japonica Group (17)
Macaca mulatta (16)
Bos taurus (14)
Candida albicans (13)
cellular organisms (11)
Apostichopus japonicus (9)
Canis lupus familiaris (9)
Drosophila simulans (8)
Hordeum vulgare (8)
Oryza sativa Indica Group (7)
Oryctolagus cuniculus (5)
Vesicular stomatitis virus (2)
Amniota (1)
Eukaryota (1)
Mammalia (1)

Organisms

Homo sapiens (25)
Mus musculus (23)
Caenorhabditis elegans (7)
Arabidopsis thaliana (6)
Aphelocoma coerulescens (2)
Rattus norvegicus (2)
Saccharomyces cerevisiae (2)
Ardisia perreticulata (1)
Terapon jarbua (1)
Yersinia pestis (1)
Plasmodium falciparum 3D7 (1)
Populus x canadensis (1)
Trichiurus japonicus (1)
Arabidopsis (1)
Codonopsis pilosula (1)

Repository

biostudies-arrayexpress (3006)
pride (2279)
iProX (643)
MetaboLights (363)
EGA (190)
MassIVE (151)
PeptideAtlas (104)
ENA (91)
PAXDB (37)
BioModels (32)
jPOST (23)
geo (22)
GNPS (14)
PanoramaPublic (13)
NODE (12)
dbGaP (7)
GPMDB (7)
Cell Collective (1)

Tissue

Cell culture (582)
Epithelial cell (177)
Leaf (94)
Brain (91)
Liver (79)
Others (76)
Permanent cell line cell (76)
Plant cell (70)
Blood plasma (58)
Lung (51)
Kidney (50)
Whole body (49)
Heart (47)
Blood serum (45)
Blood (43)
Testis (39)
Root (33)
Hepatocyte (32)
B cell (31)
Cell suspension culture (29)
Early embryonic cell (28)
Plasma Non-glyco (25)
Embryonic stem cell (25)
Macrophage (25)
Mixture (5)
Leaf (4)
Root (4)
Solvent (4)
Male Reproductive System (2)
Brain (1)

Disease

Lymphoma (12)
Melanoma (12)
Liver cancer (5)
Alzheimer's disease (5)
Leukemia (4)
Prostate cancer (4)
Lymphoid leukemia (2)
Cancer (2)
Astrocytoma (1)
HPV positive (1)
Endometrioid carcinoma (1)
Ischemic (1)
Hepatocellular carcinoma-non tumorous region (1)
Colorectal polyp (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Diffuse large B-cell lymphoma (1)
Metastatic prostate cancer (1)
Infiltrating ductal carcinoma (1)
Ductal breast cancer (1)
Dukes D primary colon cancer (1)
Pancreatic tumor (1)
Colon cancer metastasis (1)
None- acute control (1)
Polycythemia vera (1)
Small cell lung carcinoma (1)
Midgut carcinoid liver metastasis (1)
Megakaryoblastic leukemia (1)
Benign adenoma (1)
None- Acute Control (1)
Normal (1)

Technology Type

Mass Spectrometry (2279)
Shotgun proteomics (1101)
Bottom-up proteomics (407)
Mass spectrometry (270)
Affinity purification coupled with mass spectrometry proteomics (242)
Data-dependent acquisition (228)
Gel-based experiment (185)
Mass spectrometry assay (82)
NMR spectroscopy (12)
Illumina HiSeq 2000 (10)
ILLUMINA, Illumina HiSeq 2500 (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
NextSeq 550, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5M-8v1-1_B (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 2000, unknown (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
ZCall, HumanExome_12v1.1_A -GenCall (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5_8v1_A (1)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
Illumina HiSeq 2000, Illumina HiSeq 2000 (ILLUMINA) (1)
Life Tech - Solid (1)
Illumina Genome Analyzer II (1)

Instrument Platform

Illumina NovaSeq 6000 (60)
Illumina HiSeq 2000 (54)
Illumina HiSeq 2500 (44)
Illumina HiSeq 4000 (23)
NextSeq 500 (13)
BGISEQ-500 (12)
NextSeq 550 (8)
Axon GenePix 4000B scanning hardware (7)
Illumina Genome Analyzer IIx (5)
HiSeq X Ten (5)
Illumina HiSeq 1000 (4)
Illumina Genome Analyzer (3)
Illumina Genome Analyzer II (3)
Illumina NovaSeq X (3)
Illumina MiSeq (3)
AB SOLiD 5500 (2)
High resolution C. scanner (2)
Windows 7 (2)
DNBSEQ-T7 (2)
Illumina HiSeq 2000 platform (1)
Agilent Bioanalyzer 2100 (or TapeStation); Qubit 4 Fluorometer (Thermo Fisher Scientific) (1)
NanoDrop ND-1000 spectrophotometer (1)
Qsep400 (1)
Qubit fluorometer (1)
N/C (1)
BD FACSAria™ III (1)
Maxwell® AS2000 instrument (1)
BGIseq500 (1)
BD FACSMelody (1)
Dell T8310 (1)

Publication Date

2025 (525)
2013 (502)
2022 (481)
2014 (460)
2023 (437)
2026 (412)
2024 (402)
2015 (382)
2012 (375)
2010 (354)
2021 (344)
2011 (311)
2016 (267)
2020 (247)
2019 (235)
2018 (153)
2017 (113)
2008 (108)
2009 (102)
2005 (73)
2007 (65)
2006 (29)
2004 (21)
2003 (4)
2027 (1)

UNIPROT ID/AC

Q16828 (3)
O15530 (2)
P31749 (2)
P04049 (2)
Q02750 (2)
P28482 (2)
Q07889 (2)
P98077 (2)
P20936 (2)
Q06124 (2)
P62993 (2)
P08153 (2)
P11938 (2)
P11746 (2)
P13365 (2)
P20438 (2)
P53197 (2)
P26309 (2)
Q00684 (2)
P30283 (2)
P24869 (2)
P38634 (2)
P33306 (2)
Q9UUB7 (1)
Q5AFP3 (1)
Q22197 (1)
Q9Y2T1 (1)
O14640 (1)
Q8NES3 (1)
Q02297 (1)

ENSEMBL ID

ENSG00000170477 (89)
ENSG00000147251 (12)
ENSG00000247315 (9)
ENSG00000229353 (6)
ENSG00000214897 (2)
ENSG00000139318 (1)
ENSG00000168646 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:30769 (89)
CHEBI:17368 (84)
CHEBI:16704 (82)
CHEBI:16335 (80)
CHEBI:17596 (77)
CHEBI:15741 (74)
CHEBI:17154 (74)
CHEBI:17895 (74)
CHEBI:16708 (72)
CHEBI:17568 (72)
CHEBI:16750 (70)
CHEBI:16919 (68)
CHEBI:17295 (65)
CHEBI:17562 (64)
CHEBI:15891 (64)
CHEBI:15756 (63)
CHEBI:15428 (61)
CHEBI:7916 (61)
CHEBI:15354 (61)
CHEBI:16015 (60)
CHEBI:18012 (60)
CHEBI:36080 (7)
CHEBI:144829 (3)
CHEBI:16618 (2)
CHEBI:15996 (2)
CHEBI:17552 (2)
CHEBI:49603 (1)
CHEBI:16152 (1)
CHEBI:15422 (1)
CHEBI:33699 (1)

Metabolite Name

Hypoxanthine (84)
Creatine (79)
Adenosine (73)
Uridine (73)
Uracil (70)
Adenine (69)
L-Tyrosine (67)
Inosine (67)
Cytidine (64)
L-Phenylalanine (60)
Taurine (59)
Guanine (59)
Guanosine (59)
Creatinine (59)
Betaine (56)
Thymine (56)
L-Histidine (56)
Xanthine (56)
Choline (55)
L-Glutamine (55)
L-Arginine (53)
Citric acid (53)
Cytosine (53)
Xanthosine (51)
L-Tryptophan (51)
Thymidine (48)
Succinic acid (47)
L-Valine (47)
L-Proline (46)
Indole (46)

First Public Date

2014 (19)
2026 (15)
2025 (11)
2013 (9)
2024 (8)
2023 (7)
2020 (7)
2021 (5)
2019 (3)
2022 (2)
2018 (2)
2017 (1)
2016 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (28)
Constraint-based model (3)
Other (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (13)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA (9)
Huazhong Agricultural University (9)
University of Florida (8)
Bioplatforms Australia (7)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (7)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (6)
Northwest University (6)
Zhejiang University (6)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (5)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (5)
Guangzhou Medical University (5)
Univeristy of Georgia (5)
Tsinghua University, China (5)
University of Oxford (5)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (5)
Peking University (5)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (4)
Shenzhen Second People’s Hospital, The First Affiliated Hospital of Shenzhen University, Shenzhen, China (4)
Greehey Children’s Cancer Research Institute, The University of Texas Health Science Center (4)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
Agronomy College, Henan Agricultural University, China (4)
Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
Nanjing Medical University (4)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (4)
Max Delbrück Center for Molecular Medicine (4)
Department of Chemistry, Michigan State University (4)

IsPrivate

False (32)

Model Flag

Non Kinetic (2)

Submitter Keywords

Immuno-oncology (6)
Machine Learning Model (1)
TransQST (1)

Classification

protozoa (1)
bacteria (1)

Modification

57.021464 (6)
15.994915 (5)
2x(15)N labeled L-lysine (5)
4x(15)N labeled L-arginine (5)
Not available (3)
71.037114 (2)
N6 (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
1x(15)N labeled L-leucine (1)
10.008269 (1)
3.98814 (1)
8.014199 (1)
1.99407 (1)
0.984016 (1)
79.966331 (1)
6-dioxaoctanediamine derivatized cysteine (1)
42.010565 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (1656)
RNA-seq of coding RNA (495)
ChIP-seq (249)
RNA-seq of non coding RNA (97)
Comparative genomic hybridization by array (84)
Methylation profiling by high throughput sequencing (67)
Unknown experiment type (61)
Methylation profiling by array (58)
Other (34)
ChIP-chip by tiling array (27)
RNA-seq of coding RNA from single cells (18)
Genotyping by array (17)
Transcription profiling by RT-PCR (15)
DNA-seq (14)
RNA-seq of total RNA (14)
MicroRNA profiling by array (11)
ChIP-chip by array (10)
Transcription profiling by SAGE (8)
Transcription profiling by tiling array (8)
Proteomic profiling by array (8)
ATAC-seq (7)
Cell line - High-throughput sequencing (6)
Plant - High-throughput sequencing (5)
RNAi profiling by array (5)
High-throughput sequencing (4)
Animal - High-throughput sequencing (3)
Human - Single-cell sequencing (2)
Spatial transcriptomics by high-throughput sequencing (2)
4C (2)
Hi-C (2)

Release Date

2025 (14265)
2022 (13143)
2023 (11750)
2024 (11391)
2021 (10024)
2020 (7520)
2019 (5519)
2018 (4800)
2017 (4087)
2016 (3618)
2015 (3118)
2014 (2486)
2026 (1993)
2013 (1821)
2012 (1506)
2011 (1230)
2010 (1080)
2009 (745)
2008 (577)
2007 (270)
2005 (186)
2006 (165)
2004 (74)
2003 (47)
2002 (45)
2000 (34)
2001 (33)
1999 (21)
1998 (20)
1997 (10)

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Terapon jarbua isolate:TJ-2025-Chen

Terapon jarbua isolate:TJ-2025-Chen Genome sequencing

PRJNA1473037 | ENA

The plastid genome and phylogenetic status of Sinosenecio eriopodus C. Jeffrey & Y. L. Chen 1984 (Asteraceae).

Not available

S-EPMC11703530 | biostudies-literature

On the automatic link between affect and tendencies to approach and avoid: Chen and Bargh (1999) revisited.

Not available

S-EPMC4382967 | biostudies-literature

Chromosome-level genome assembly of Ampulex clypecomplana Chen & Li (Hymenoptera: Ampulicidae).

Not available

S-EPMC12311123 | biostudies-literature

Review of the genus Canalirogas van Achterberg & Chen (Hymenoptera, Braconidae, Rogadinae) from Vietnam, with description of ten new species.

Not available

S-EPMC4467180 | biostudies-literature

A new species of the genus Separatatus Chen & Wu (Hymenoptera, Braconidae, Alysiinae) from South Korea.

Not available

S-EPMC9848791 | biostudies-literature

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Preparation and characterization of immobilized 5-HT_1A receptor stationary phase for high throughput screening of the receptor-binding ligands from complex systems like Curcuma wenyujin Y. H. Chen et C. Ling extract.

Not available

S-EPMC8806404 | biostudies-literature

The complete mitochondrial genome and phylogenetic analysis of the ocellated angelshark: Squatina tergocellatoides Chen, 1963.

Not available

S-EPMC9621291 | biostudies-literature

Transcriptome analyses using the Chen Lab Cotton 25k oligo microarray

The chip of cotton oligonucleotide microarrrays, which contain ~23,000 UniGenes from our own ESTs sequence project (Gossypium hirsutum L. TM-1 immature ovules (GH_TMO) ) and open resources, was developed. Transcriptome analyses were performed to compare gene expression changes in laser capture micro...

ORGANISM(S): Gossypium hirsutum

2011-05-06 | E-GEOD-27506 | biostudies-arrayexpress

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