Chen Chun C - OmicsDI

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Unknown (139)
Transcriptomics (45)
Proteomics (26)
Genomics (16)
Metabolomics (15)

Organisms

Homo sapiens (32)
Mus musculus (21)
Phragmites australis (12)
Ehrlichia muris (12)
Numida meleagris (12)
Salmonella enterica subsp. enterica str. xld (12)
Pseudomonas citronellolis (12)
Escherichia coli BW25113 (12)
lactic acid bacterium ZJGS0101 (12)
Carassius (12)
environmental samples (12)
Escherichia phage HildyBeyeler (12)
Oryza sativa Indica Group (3)
Rattus norvegicus (2)
Drosophila melanogaster (2)
Apis mellifera scutellata (1)
Camellia sinensis (1)
Arachis hypogaea (1)
Macaca mulatta (1)
Panonychus citri (1)
Medicago truncatula (1)
Schizosaccharomyces pombe (1)
Saccharomyces cerevisiae (1)
uncultivated soil bacterium (1)
Ganoderma lingzhi (1)
Streptomyces (1)
Bombyx mori (1)
Penaeus vannamei (1)
Oryza sativa (1)
Mus (1)

Repository

biostudies-arrayexpress (53)
MetaboLights (15)
iProX (13)
pride (12)
EGA (8)
MassIVE (1)

Tissue

Vein endothelial cell (4)
Cell culture (3)
Optic nerve (2)
Retina (2)
Plant cell (1)
Leaf (1)
Epithelial cell (1)

Technology Type

Mass spectrometry (14)
Mass Spectrometry (12)
Data-independent acquisition (4)
Shotgun proteomics (4)
Gel-based experiment (2)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Mass spectrometry assay (1)
SRM/MRM (1)
Data-dependent acquisition (1)
Bottom-up proteomics (1)

Instrument Platform

Xevo G2 QTOF (Waters) (3)
TOF Pegasus HT (LECO) (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Axon GenePix 4000B scanning hardware (1)
NextSeq 500 (1)
Q Exactive (1)
Wates I-Class/XEVO-G2 XS QTOF (1)
Xevo TQ MS (Waters) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - - reverse phase (1)
TripleTOF 5600 (AB Sciex) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2015 (12)
2012 (9)
2017 (6)
2014 (6)
2013 (6)
2011 (6)
2010 (6)
2021 (6)
2018 (5)
2026 (5)
2019 (4)
2022 (4)
2016 (3)
2020 (3)
2009 (2)
2025 (2)
2023 (2)
2008 (1)
2007 (1)

CHEBI ID

CHEBI:16040 (5)
CHEBI:17748 (5)
CHEBI:28875 (5)
CHEBI:7916 (5)
CHEBI:18050 (5)
CHEBI:28941 (4)
CHEBI:30805 (4)
CHEBI:46961 (4)
CHEBI:16325 (4)
CHEBI:16525 (4)
CHEBI:16750 (4)
CHEBI:28842 (4)
CHEBI:16335 (4)
CHEBI:17568 (4)
CHEBI:18211 (4)
CHEBI:18107 (4)
CHEBI:28834 (4)
CHEBI:16359 (4)
CHEBI:16704 (4)
CHEBI:16015 (4)
CHEBI:17295 (4)
CHEBI:17596 (4)
CHEBI:28716 (4)
CHEBI:16828 (4)
CHEBI:17368 (4)
CHEBI:3437 (3)
CHEBI:28918 (3)
CHEBI:28315 (3)
CHEBI:9347 (3)
CHEBI:27781 (3)

Metabolite Name

Xanthosine (4)
L-Cystathionine (3)
2'-deoxycytidine (3)
5'-deoxyadenosine (3)
Spermidine (3)
Guanine (3)
Thymidine (3)
Pseudouridine (3)
Hypoxanthine (3)
GW 2433 (2)
Trigonelloside C (2)
Valerosidatum (2)
3-Acetyl-5alpha-androstane-3beta,17beta-diol 3-acetate (2)
D-glucitol (2)
Taurochenodeoxycholic acid (2)
20,21,21-Trifluoro-3-methoxy-19-nor-17alpha-pregna-1,3,5(10),20-tetraen-17-ol (2)
3alpha,11beta,21-Trihydroxy-20-oxo-5beta-pregnan-18-al (2)
Glycolithocholic acid (2)
N,N-dimethylglycine (2)
Ustiloxin (2)
Myxothiazol Z (2)
17-Hydroxy-3-oxo-17alpha-pregna-1,4-diene-21-carboxylic acid, gamma-lactone (2)
Cardiopetalidine (2)
(6R)-10-Formyltetrahydropteroyldiglutamate (2)
Beiwutine (2)
L-pipecolic acid (2)
Cammaconine (2)
Z-Gly-Pro-Leu-Gly-Pro (2)
Taurolithocholic acid (2)
Caracurine V (2)

Modification

1x(15)N labeled L-leucine (1)

Study type

Transcription profiling by array (33)
ChIP-seq (7)
RNA-seq of coding RNA (4)
Unknown experiment type (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Genotyping by array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (20)
2012 (15)
2025 (15)
2015 (14)
2019 (13)
2014 (13)
2024 (12)
2016 (11)
2013 (10)
2020 (10)
2011 (9)
2023 (8)
2022 (8)
2018 (8)
2010 (7)
2017 (5)
2009 (5)
2026 (4)
2008 (3)
2007 (1)
2005 (1)

Lab affiliation

Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
Department of Ophthalmology, Beijing Key Laboratory of Restoration of Damaged Ocular Nerve, Peking University Third Hospital, Beijing, China (2)
Stanford School of Medicine (2)
Graduate Institute of Biomedical Sciences, department of Cell and Molecular Biology, College of Medicine, and Molecular Medicine Research Center, Chang Gung University, Taoyuan 33302, Taiwan. Liver Research Center, Chang Gung Memorial Hospital and Chang Gung University, Taoyuan 33302, Taiwan. (1)
Chun-Hung Lin's Lab, Institute of Biological Chemistry, Academia Sinica, No. 128 Academic Road Section 2, Nan-Kang, Taipei, 11529, Taiwan (1)
Department of Plant Pathology, University of Georgia, Athens, Georgia, USA (1)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (1)

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shld1 effect on 3T3 cell

NIH3T3 cells were cultured in medium containing 1 uM, 100 nM, 10 nM and 0 nM (serve as control) shld1 for 24 hours. Three independent cultures were obtained for each drug concentration. Total RNA from experimental samples were extracted using RNeasy Kit (Qiagen). Mouse RNA pooled from 11 cell line...

ORGANISM(S): Mus musculus

2007-09-27 | E-GEOD-5916 | biostudies-arrayexpress

Updates on the treatment and outcomes of dual chronic hepatitis C and B virus infection.

Not available

S-EPMC3961993 | biostudies-literature

Sulfadiazine Sodium Improves Dysfunctional Metabolomics in Toxoplasma gondii-infected Mice

Toxoplasma gondii is an obligate intracellular protozoan parasite that poses a severe threat to human health, especially those immune-compromised individuals. Sulfadiazine sodium (SDZ) is widely used for the treatment of human toxoplasmosis. However, systems biology researches on the therapeutic eff...

2019-06-18 | MTBLS852 | MetaboLights

The complete chloroplast genome sequence of Phyllagathi hainanensis (Melastomataceae) and phylogenetic analysis.

Not available

S-EPMC8635600 | biostudies-literature

Hepatic Metabolomics Investigation in Acute and Chronic Murine Toxoplasmosis

Toxoplasma gondii poses a great threat to human health, with no approved vaccine available for the treatment of T. gondii infection. T. gondii infections are not limited to the brain, and may also affect other organs especially the liver. Identification of host liver molecules or pathways involved i...

2019-08-06 | MTBLS586 | MetaboLights

Identification and characterization of a second lexA gene of Xanthomonas axonopodis Pathovar citri.

Not available

S-EPMC1169025 | biostudies-literature

New distribution records of two bamboo species in Yunnan, China with description of the inflorescence for Melocalamus yunnanensis (Poaceae, Bambusoideae).

Not available

S-EPMC4856902 | biostudies-literature

Adjuvant heparanase inhibitor PI-88 therapy for hepatocellular carcinoma recurrence.

Not available

S-EPMC4145780 | biostudies-literature

Trimeric and Dimeric Carbazole Alkaloids from Murraya microphylla.

Not available