Chen John J - OmicsDI

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Unknown (1147)
Genomics (139)
Transcriptomics (59)
Proteomics (35)
Metabolomics (10)
Genomic (6)
Models (4)
Multiomics (1)

Organisms

Homo sapiens (151)
Mus musculus (24)
Caenorhabditis elegans (22)
Rattus norvegicus (7)
Drosophila melanogaster (4)
Schizosaccharomyces pombe (2)
Saccharomyces cerevisiae (2)
Drosophila mojavensis (1)
Populus x canadensis (1)
Zea mays (1)
Trypanosoma brucei (1)
Glycine max (1)
Ovis aries (1)
Arabidopsis thaliana (1)
Corynebacterium glutamicum ATCC 13032 (1)
Brassica oleracea var. botrytis (1)
Prorocentrum cordatum (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)

Repository

EGA (112)
biostudies-arrayexpress (86)
pride (16)
MassIVE (11)
MetaboLights (8)
dbGaP (6)
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GNPS (2)
iProX (2)
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PAXDB (1)
PeptideAtlas (1)

Tissue

Blood plasma (2)
Melanocyte (2)
T cell (2)
Brain (1)
Breast (1)
Breast cancer cell line (1)
Cell culture (1)
Epithelial cell (1)
Fibroblast (1)
Head and neck squamous cell carcinoma cell (1)
Kidney (1)
Lung (1)
Pancreatic ductal carcinoma cell (1)

Disease

Melanoma (5)
Colon cancer metastasis (1)
Small cell lung carcinoma (1)
Breast cancer (1)
Immune system disease (1)
Lung cancer (1)
Pancreatic ductal adenocarcinoma (1)

Technology Type

Mass Spectrometry (16)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Shotgun proteomics (6)
Illumina HiSeq 2000 (5)
Bottom-up proteomics (5)
Mass spectrometry assay (2)
Data-dependent acquisition (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Affymetrix_U133v2, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Life Tech - Solid (1)

Instrument Platform

Q Exactive (7)
Illumina Genome Analyzer II (3)
Illumina NovaSeq 6000 (3)
Illumina Genome Analyzer (2)
TripleTOF 5600 (2)
LTQ Orbitrap (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Q Exactive Plus (1)
Agilent 8890 GC-MS (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
LTQ Velos (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
TripleTOF 6600 (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2011 (23)
2013 (18)
2022 (11)
2017 (8)
2010 (8)
2012 (7)
2014 (6)
2006 (6)
2023 (6)
2020 (4)
2016 (4)
2008 (4)
2005 (4)
2025 (4)
2018 (4)
2007 (3)
2026 (3)
2004 (2)
2021 (2)
2019 (2)
2003 (1)
2024 (1)
2015 (1)

UNIPROT ID/AC

A0A078BWL0_BRANA (1)
A0A078C354_BRANA (1)
A0A078C5F6_BRANA (1)
A0A078CAM5_BRANA (1)
A0A078CAS9_BRANA (1)
A0A078CBC4_BRANA (1)
A0A078CG85_BRANA (1)
A0A078CI72_BRANA (1)
A0A078CJJ5_BRANA (1)
A0A078CJY2_BRANA (1)
A0A078CUQ3_BRANA (1)
A0A078CX39_BRANA (1)
A0A078CXF9_BRANA (1)
A0A078D4W1_BRANA (1)
A0A078D7G6_BRANA (1)
A0A078D911_BRANA (1)
A0A078DAQ0_BRANA (1)
A0A078DBS4_BRANA (1)
A0A078DES1_BRANA (1)
A0A078DFR1_BRANA (1)
A0A078DGP8_BRANA (1)
A0A078DIZ0_BRANA (1)
A0A078DMP0_BRANA (1)
A0A078DNQ5_BRANA (1)
A0A078DQX4_BRANA (1)
A0A078DRK7_BRANA (1)
A0A078E950_BRANA (1)
A0A078EBD9_BRANA (1)
A0A078ECX4_BRANA (1)
A0A078EDI6_BRANA (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:17154 (5)
CHEBI:17268 (5)
CHEBI:17568 (5)
CHEBI:18012 (5)
CHEBI:4676 (5)
CHEBI:1427 (4)
CHEBI:15354 (4)
CHEBI:15728 (4)
CHEBI:15741 (4)
CHEBI:15756 (4)
CHEBI:15978 (4)
CHEBI:16010 (4)
CHEBI:16411 (4)
CHEBI:16449 (4)
CHEBI:16530 (4)
CHEBI:16704 (4)
CHEBI:16919 (4)
CHEBI:17521 (4)
CHEBI:17775 (4)
CHEBI:17992 (4)
CHEBI:18300 (4)
CHEBI:22653 (4)
CHEBI:25017 (4)
CHEBI:27747 (4)
CHEBI:27897 (4)
CHEBI:28044 (4)
CHEBI:28484 (4)
CHEBI:28834 (4)
CHEBI:30769 (4)

Metabolite Name

N1-Methyl-2-pyridone-5-carboxamide (4)
Alanine (3)
Asparagine (3)
Aspartate (3)
Beta-alanine (3)
Citrate (3)
Citrulline (3)
Cysteine (3)
Deoxycholic acid (3)
Erythritol (3)
Fructose (3)
Glutamine (3)
Glycerol (3)
Glycine (3)
Isoleucine (3)
Lactate (3)
Leucine (3)
Leucine (3)
Lysine (3)
Malate (3)
Maltose (3)
Methionine (3)
Ornithine (3)
Phenylalanine (3)
Phosphate (3)
Proline (3)
Serine (3)
Threonine (3)
Tryptophan (3)
Tyrosine (3)

IsPrivate

False (4)

Modelling Approach

Ordinary differential equation model (4)

Study type

Transcription profiling by array (41)
ChIP-seq (26)
RNA-seq of coding RNA (8)
Unknown experiment type (5)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (131)
2021 (130)
2025 (129)
2022 (127)
2024 (116)
2020 (75)
2018 (75)
2011 (61)
2017 (59)
2019 (52)
2016 (46)
2014 (42)
2013 (41)
2015 (36)
2012 (34)
2010 (23)
2026 (18)
2009 (8)
2008 (8)
2006 (7)
2007 (6)
2005 (5)
2004 (3)
2003 (1)

Lab affiliation

Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Research Analytical Biochemistry Lab (RABL), Toronto Metropolitan University, Canada (2)
Cutaneous Oncology/Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
Department of Biochemistry and Biophysics University of North Carolina Chapel Hill, NC USA (1)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (1)
Department of Biology, Catholic University of America (1)
Department of Microbiology University of Illinois B103 CLSL 601 S Goodwin Ave Urbana, IL 61801 (1)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (1)
Laboratory of Cell and Developmental Signaling, National Cancer Institute, National Institutes of Health, Frederick, MD 21702, USA (1)
Reader in Centre for Genomics and Computational Biology Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ Tel: +44 (0)20 7882 8266 | Fax: +44 (0)20 7882 3891 | Email: p.cutillas@qmul.ac.uk www.bci.qmul.ac.uk/research/centre-profiles/haemato-oncology.html https://www.bci.qmul.ac.uk/en/staff/item/pedro-cutillas (1)
Thoracic Oncology Chemical Biology and Molecular Medicine Program Moffitt Cancer Center (1)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (1)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)

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Dietary folate depletion and repletion in A/J and C57BL/6J mice

Defects in homocysteine and folate metabolism are associated with increased risks for neural tube and congenital heart defects, cardiovascular disease and stroke, cancers, and neurodegeneration. In many but not all cases, dietary supplementation with folate significantly reduces the severity and in...

ORGANISM(S): Mus musculus

2008-08-27 | E-GEOD-9242 | biostudies-arrayexpress

20-175-Cronan-ZheHu and 20-200-Cronan-ZHu

Analysis performed on protein samples submitted by Zhe Hu of the John E. Cronan Laboratory by the Protein Sciences Facility of the Biotechnology Center of the University of Illinois at Urbana-Champaign

ORGANISM(S): Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

2021-01-29 | PXD023486 | Pride

Lc-ms/ms