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ProteomicsAPIR: a universal FDR-control framework for boosting peptide identification power by aggregating multiple proteomics database search algorithms
Advances in mass spectrometry (MS) have enabled high-throughput analysis of proteomes in biological systems. The state-of-the-art MS data analysis relies on database search algorithms to quantify proteins by identifying peptide-spectrum matches (PSMs), which convert mass spectra to peptide sequences...
ORGANISM(S): Pyrococcus furiosus 
2021-09-21 | PXD028558 | Pride
Pyrococcus furiosus (pfu) Proteomics Complex proteomic standard 
ProteomicsMolecular Profiling Defines Three Subtypes of Synovial Sarcoma
Synovial Sarcomas (SS) are characterized by the presence of the SS18::SSX fusion gene, which protein product induce chromatin changes through remodeling of the BAF complex (BRG1/BRM-associated factor complex), which leads to widespread alterations in gene expression that drive tumor development and ...
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD053789 | Pride
Synovial sarcoma  transcriptomics  multi-omic  molecular subtypes  proteomics 
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