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Unknown (57573)
Proteomics (1530)
Transcriptomics (844)
Metabolomics (240)
Genomics (125)
Multiomics (10)
Genomic (2)
Other (2)

Organisms

Homo sapiens (617)
Mus musculus (354)
Rattus norvegicus (75)
Arabidopsis thaliana (36)
Schizosaccharomyces pombe (27)
Drosophila melanogaster (20)
Oryza sativa (15)
Gallus gallus (11)
Zea mays (11)
Danio rerio (10)
Saccharomyces cerevisiae (10)
Sus scrofa (9)
Caenorhabditis elegans (7)
Oryza sativa Japonica Group (5)
Folsomia candida (3)
Macaca mulatta (3)
Oryza sativa Indica Group (3)
Citrus sinensis (3)
Hordeum vulgare (3)
Bos taurus (3)
Ovis aries (3)
Apostichopus japonicus (2)
Helicobacter pylori 26695 (2)
Schistosoma japonicum (2)
Vibrio parahaemolyticus (2)
Saccharomyces cerevisiae SK1 (2)
Bacteroides thetaiotaomicron (2)
Bifidobacterium longum (2)
Verticillium dahliae (2)
mouse gut metagenome (2)

Organisms

Arabidopsis thaliana (2)
groundwater metagenome (1)
Zea mays subsp. mays (1)
Danio rerio (1)
Mus musculus (1)
Homo sapiens (1)

Repository

pride (985)
biostudies-arrayexpress (933)
iProX (417)
MetaboLights (223)
MassIVE (112)
EGA (26)
GNPS (17)
ENA (8)
PeptideAtlas (6)
jPOST (5)
geo (3)
LINCS (3)
dbGaP (2)
GPMDB (2)
NODE (2)
PAXDB (2)
PanoramaPublic (1)

Tissue

Cell culture (253)
Epithelial cell (70)
Leaf (55)
Plant cell (48)
Brain (44)
Liver (40)
Permanent cell line cell (36)
Blood plasma (28)
Heart (27)
Whole body (25)
Lung (20)
Testis (20)
Blood serum (18)
Root (17)
Kidney (15)
Colon (13)
T cell (13)
Blood (12)
Oocyte (12)
B cell (11)
Cell suspension culture (11)
Embryonic stem cell (11)
Macrophage (11)
Skin (11)
Spleen (11)
Stem cell (11)
Fibroblast (10)
Others (3)
Male Reproductive System (2)
Brain (1)

Disease

Disease free (32)
Breast cancer (24)
Colon cancer (14)
Acute leukemia (11)
Cervix carcinoma (10)
Prostate adenocarcinoma (8)
Non-small cell lung carcinoma (7)
Type 2 diabetes mellitus (7)
Cardiovascular system disease (5)
Influenza (5)
Malignant neoplasm of ovary (5)
Alzheimer's disease (4)
Brain glioblastoma multiforme (4)
Gastric adenocarcinoma (4)
Lung adenocarcinoma (4)
Lung cancer (4)
Not Available (2)
HPV positive (1)
Endometrioid carcinoma (1)
Ischemic (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Infiltrating ductal carcinoma (1)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
None- acute control (1)
Small cell lung carcinoma (1)
Megakaryoblastic leukemia (1)
Benign adenoma (1)
None- Acute Control (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (985)
Shotgun proteomics (568)
Mass spectrometry (181)
Bottom-up proteomics (120)
Affinity purification coupled with mass spectrometry proteomics (95)
Gel-based experiment (74)
Data-dependent acquisition (70)
Top-down proteomics (52)
Mass spectrometry assay (39)
SWATH MS (32)
Data-independent acquisition (30)
Chemical cross-linking coupled with mass spectrometry proteomics (23)
SRM/MRM (15)
Mass spectrometry imaging (7)
All-ion fragmentation (6)
Proteogenomics (5)
Affinity proteomics (4)
MSE (4)
Illumina HiSeq 2000 (3)
Chemiluminescence (3)
ELISA (3)
NMR spectroscopy (3)
RNA mass spectrometry (2)
DiaPASEF (1)
HDMSE (1)
Immunopeptidomics (1)

Instrument Platform

Q Exactive (51)
Q Exactive Plus (23)
Illumina NovaSeq 6000 (16)
Illumina HiSeq 2500 (13)
Illumina HiSeq 2000 (11)
Illumina HiSeq 4000 (8)
Axon GenePix 4000B scanning hardware (6)
NextSeq 550 (4)
NextSeq 500 (4)
6520A Quadrupole Time-of-Flight LC/MS (3)
Windows 7 (2)
Illumina Genome Analyzer IIx (2)
HiSeq X Ten (2)
Illumina MiSeq (2)
6470 Triple Quadrupole LC/MS (Agilent instrument model) (2)
6545XT Q-TOF LC\/MS (Agilent Instrument model) (2)
Dell T8310 (1)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
BD Influx (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1500 (1)
7820A/5977B GC/MS (Agilent instrument model) (1)
Agilent 1290 Infinity II HPLC system coupled to a qTOF 6550 ESI\/MS (1)
Agilent 1290 Infinity II LC System (Agilent Technologies) coupled with a qTOF 6550 mass detector (1)

Publication Date

2022 (251)
2025 (224)
2023 (222)
2021 (189)
2024 (174)
2020 (140)
2014 (139)
2013 (134)
2015 (130)
2019 (129)
2016 (110)
2026 (108)
2010 (105)
2012 (101)
2017 (82)
2018 (77)
2011 (70)
2005 (53)
2009 (28)
2008 (27)
2007 (22)
2006 (15)
2004 (12)
2003 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

ENSEMBL ID

ENSG00000170477 (6)
ENSG00000247315 (5)
ENSG00000147251 (4)
ENSG00000229353 (3)
ENSG00000214897 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17368 (68)
CHEBI:16704 (63)
CHEBI:16335 (62)
CHEBI:17596 (62)
CHEBI:30769 (58)
CHEBI:16750 (57)
CHEBI:17154 (56)
CHEBI:16708 (55)
CHEBI:17568 (55)
CHEBI:16919 (55)
CHEBI:15354 (51)
CHEBI:16235 (50)
CHEBI:15891 (50)
CHEBI:17895 (50)
CHEBI:17562 (48)
CHEBI:7916 (47)
CHEBI:16027 (47)
CHEBI:16737 (47)
CHEBI:15756 (45)
CHEBI:15741 (44)
CHEBI:17750 (44)
CHEBI:17509 (43)
CHEBI:17295 (43)
CHEBI:17748 (42)
CHEBI:27897 (42)
CHEBI:17533 (41)
CHEBI:6650 (41)
CHEBI:17015 (41)
CHEBI:16015 (41)
CHEBI:30915 (41)

Metabolite Name

Creatine (51)
Hypoxanthine (48)
Inosine (47)
Uridine (45)
Adenosine (43)
Uracil (42)
Adenine (42)
L-Tyrosine (42)
Guanosine (40)
Guanine (38)
Taurine (35)
L-Phenylalanine (35)
L-Histidine (34)
Choline (34)
Cytidine (34)
Creatinine (34)
L-Arginine (33)
Xanthine (33)
Thymine (32)
Indole (32)
Riboflavin (32)
Thymidine (32)
Betaine (31)
Xanthosine (31)
L-Tryptophan (31)
Uric acid (31)
Spermidine (29)
Cytosine (29)
L-Glutamine (28)
L-Valine (28)

First Public Date

2023 (4)
2021 (2)
2024 (1)
2014 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
57.021464 (2)
15.994915 (1)
1x(15)N labeled L-leucine (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
6-dioxaoctanediamine derivatized cysteine (1)
N6 (1)
Not available (1)

Study type

Transcription profiling by array (532)
RNA-seq of coding RNA (182)
ChIP-seq (67)
RNA-seq of non coding RNA (27)
Methylation profiling by high throughput sequencing (20)
Unknown experiment type (19)
Comparative genomic hybridization by array (15)
Methylation profiling by array (14)
Transcription profiling by RT-PCR (9)
Other (6)
ChIP-chip by tiling array (5)
ChIP-chip by array (4)
Genotyping by array (4)
DNA-seq (4)
RNA-seq of coding RNA from single cells (4)
Transcription profiling by SAGE (2)
Transcription profiling by tiling array (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
Transcription profiling by high throughput sequencing (1)
Cell line - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
Translation profiling (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
4C (1)
Hi-C (1)
Ribo-seq (1)

Release Date

2025 (9267)
2022 (8157)
2023 (7425)
2024 (7373)
2021 (6095)
2020 (4430)
2019 (3091)
2018 (2577)
2017 (2145)
2016 (1745)
2015 (1317)
2026 (1270)
2014 (1036)
2013 (728)
2012 (531)
2011 (374)
2010 (333)
2009 (186)
2008 (130)
2005 (81)
2007 (75)
2006 (62)
2004 (33)
2002 (14)
2003 (13)
2000 (7)
2001 (4)
1999 (4)
1998 (3)

Lab affiliation

Peking University (5)
Shandong Normal University (5)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (5)
University of Pennsylvania (5)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (4)
Institute of Biophysics, Chinese Academy of Sciences (4)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Zhejiang University (4)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen 518083, China (3)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (3)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (3)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (3)
Max Delbrück Center for Molecular Medicine (3)
Michigan State University (3)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center (3)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (3)
Shenyang Agricultural University (3)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (3)
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing 211166, China (3)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (3)
Tsinghua University (3)
University of Florida (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
Academia Sinica (2)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (2)
Agronomy College, Henan Agricultural University, China (2)