Chen Sa S - OmicsDI

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Unknown (2942)
Proteomics (106)
Transcriptomics (63)
Genomics (30)
Metabolomics (22)
Multiomics (2)

Organisms

Homo sapiens (80)
Mus musculus (42)
Arabidopsis thaliana (11)
Escherichia coli (9)
Glycine max (7)
Triticum aestivum (2)
Drosophila melanogaster (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Chlorocebus sabaeus (2)
Klebsiella pneumoniae (2)
Klebsiella variicola (2)
Staphylococcus aureus (2)
Streptococcus pyogenes (2)
Sus scrofa domesticus (2)
Zea mays (2)
Phaseolus coccineus (1)
Phaseolus vulgaris (1)
Colletotrichum higginsianum (1)
Lactococcus lactis (1)
Pseudomonas aeruginosa PAO1 (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Candida albicans (1)
Severe acute respiratory syndrome coronavirus 2 (1)
288671 (1)
Aspergillus aculeatus ATCC 16872 (1)
Aspergillus brasiliensis (1)
Aspergillus carbonarius ITEM 5010 (1)
Aspergillus sydowii (1)

Repository

biostudies-arrayexpress (85)
pride (68)
MetaboLights (22)
MassIVE (20)
iProX (18)
EGA (9)

Tissue

Cell culture (16)
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Heart (3)
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Plant cell (2)
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T cell (2)
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Breast cancer cell (1)
Breast cancer cell line (1)
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HEK-293T cell (1)

Disease

Melanoma (4)
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Acute leukemia (2)
Disease free (2)
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Brain glioblastoma multiforme (1)
COVID-19 (1)
Cardiovascular system disease (1)
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Immune system disease (1)
Long COVID (1)
Lung squamous cell carcinoma (1)
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Non-small cell lung carcinoma (1)
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Retinopathy of prematurity (1)
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Viral infectious disease (1)

Technology Type

Mass Spectrometry (68)
Shotgun proteomics (30)
Mass spectrometry (19)
Bottom-up proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-dependent acquisition (8)
SWATH MS (4)
Data-independent acquisition (3)
Gel-based experiment (3)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
DiaPASEF (1)
Glycoproteomics (1)
Mass spectrometry imaging (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Q Exactive (10)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina HiSeq 4000 (2)
LTQ Orbitrap Velos (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion Lumos (2)
Q Exactive Plus (2)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
BD Influx (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion (1)
Orbitrap Fusion ETD (1)
TripleTOF 5600 (1)
6230 TOF LC/MS (Agilent) (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reversed-phase-chromatography (1)
Liquid Chromatography MS - positive - direct infusion (1)

Publication Date

2021 (23)
2022 (17)
2025 (17)
2023 (16)
2015 (16)
2019 (15)
2014 (14)
2024 (11)
2012 (11)
2018 (10)
2013 (10)
2011 (10)
2026 (9)
2016 (7)
2017 (7)
2010 (6)
2020 (3)
2009 (3)
2008 (3)
2007 (3)
2006 (1)
2027 (1)

CHEBI ID

CHEBI:17154 (8)
CHEBI:28044 (8)
CHEBI:17596 (7)
CHEBI:15428 (6)
CHEBI:15741 (6)
CHEBI:15756 (6)
CHEBI:16704 (6)
CHEBI:17568 (6)
CHEBI:17750 (6)
CHEBI:25017 (6)
CHEBI:27897 (6)
CHEBI:30769 (6)
CHEBI:7916 (6)
CHEBI:15354 (5)
CHEBI:15366 (5)
CHEBI:15728 (5)
CHEBI:16196 (5)
CHEBI:16449 (5)
CHEBI:16811 (5)
CHEBI:16828 (5)
CHEBI:16919 (5)
CHEBI:17268 (5)
CHEBI:17295 (5)
CHEBI:17368 (5)
CHEBI:17533 (5)
CHEBI:17562 (5)
CHEBI:17822 (5)
CHEBI:18132 (5)
CHEBI:18186 (5)
CHEBI:22653 (5)

Metabolite Name

Nicotinamide (6)
Uridine (6)
Betaine (5)
Creatine (5)
Inosine (5)
L-Glutamine (5)
Leucine (5)
Pantothenic Acid (5)
Phenylalanine (5)
Alanine (4)
Asparagine (4)
Glycine (4)
Hypoxanthine (4)
L-Proline (4)
L-Tyrosine (4)
Lysine (4)
Methionine (4)
Nicotinate (4)
Proline (4)
S-Adenosyl-L-homocysteine (4)
Sarcosine (4)
Succinate (4)
Taurine (4)
Tyrosine (4)
Uracil (4)
Uric acid (4)
Valine (4)
Xanthine (4)
(Indol-3-yl)acetamide (3)
1-Kestose (3)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (24)
ChIP-seq (11)
Methylation profiling by high throughput sequencing (10)
Unknown experiment type (4)
RNA-seq of non coding RNA (2)
Human - Single-cell sequencing (1)
Genotyping by array (1)
Bisulfite-seq (1)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (338)
2025 (328)
2021 (313)
2023 (305)
2024 (299)
2020 (239)
2019 (168)
2018 (161)
2015 (145)
2016 (134)
2017 (132)
2014 (106)
2013 (78)
2012 (67)
2011 (59)
2026 (45)
2010 (43)
2009 (27)
2008 (13)
2007 (11)
2006 (6)
2004 (4)
2002 (3)
2005 (1)
2001 (1)
1998 (1)

Lab affiliation

Bioplatforms Australia (7)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Boston Children's Hospital (2)
Icahn School of Medicine at Mount Sinai (2)
Moffitt Cancer Center (2)
Ottawa Hospital Research Institute (2)
Yale University (2)
Yale University Department of Chemistry (2)
Agios Pharmaceuticals 88 Sidney Street Cambridge MA 02139 USA (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Biological Engineering, MIT (1)
Bioplatforms Australia (project manager) (1)
Brigham and Women's Hospital and Harvard Medical School (1)
Cancer and Immunology Research Center, National Yang Ming Chiao Tung University (1)
Center for Cancer Research, Massachusetts General Hospital, Boston MA, USA;Department of Chemistry and Chemical Biology, Harvard University, Cambridge MA, USA. (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
College of Animal Science and Technology, China Agricultural University.College of Animal Science and Technology, China Agricultural University. (1)
Department of Biochemistry Stanford Cancer Institute Stanford University Stanford, CA 94305, USA (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Biochemistry and Stanford Cancer Institute, Stanford University School of Medicine (1)
Department of Biology, University of Florida, Gainesville, FL, USA Proteomics and Mass Spectrometry, Interdisciplinary Center for Biotechnology Research (ICBR), University of Florida, Gainesville, FL, USA (1)
Department of Chemical Physiology and Biochemistry Oregon Health and Science University Portland, OR 97239 USA (1)
Department of Medicine, Weill Cornell Medicine, New York, NY, USA (1)
Department of Microbiology-Immunology, University of North Carolina at Chapel Hill, NC, (1)
Department of Opthalmology, Boston Children's Hospital, Harvard Medical School (1)
Department of Pathology and Laboratory Medicine,University of Pennsylvania Perelman School of Medicine, Philadelphia, PA USA Division of Cancer Pathobiology,Children's Hospital of Philadelphia, Philadelphia, PA USA (1)
Department of Structural and Computational Biology, Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna, Austria Department of Medical Biochemistry, Medical University of Vienna, 1090 Vienna, Austria (1)
Department of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL 2Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL (1)

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Transcriptome analysis in Haematococcus pluvialis: astaxanthin induction by salicylic acid (SA) and jasmonic acid (JA)

Haematococcus pluvialis transcriptome analysis The genetic transcriptome details of astaxanthin biosynthesis were analysed by exposing the algal cells to 25 mg/L of SA and JA for 1, 6 and 24 hours, plus to the control (no stress). SRP062153 PRJNA292140

ORGANISM(S): Haematococcus pluvialis

2016-02-15 | E-GEOD-71986 | biostudies-arrayexpress

Quantitative analysis of changes in the phosphoproteome of maize induced by the plant hormone salicylic acid

Phytohormone salicylic acid (SA) plays an important role in regulating various physiological and biochemical processes. Our previous study identified several protein kinases responsive to SA, suggesting an important role for phosphorylation events in the plant response to SA.

ORGANISM(S): Zea mays (Maize)

2018-10-24 | PXD002586 | Pride

The matricellular protein CCN1 activates a pro-inflammatory genetic program in murine macrophages

Effects of the matricellular protein CCN1 on macrophage inflammatory gene expression was tested in a macrophage cell line I-13.35. CCN1 (CYR61) is a matricellular protein that is highly expressed at sites of inflammation and wound repair. In these contexts, CCN1 can modify the activities of specifi...

ORGANISM(S): Mus musculus

2010-05-14 | E-GEOD-19731 | biostudies-arrayexpress

Effects of ethephon on heartwood formation and related physiological indices of Dalbergia odorifera T. Chen.

Not available

S-EPMC10850394 | biostudies-literature

High removal of thiophene from model gasoline by porous MIL-101(Cr)/SA hybrid membrane.

Not available

S-EPMC9091623 | biostudies-literature

Higher S-adenosylhomocysteine and lower ratio of S-adenosylmethionine to S-adenosylhomocysteine were more closely associated with increased risk of subclinical atherosclerosis than homocysteine.

Not available

S-EPMC9399787 | biostudies-literature

Pervasive interactions of Sa and Sb loci cause high pollen sterility and abrupt changes in gene expression during meiosis that could be overcome by double neutral genes in autotetraploid rice.