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TranscriptomicsStrand-specific transcriptome profiles of the oral pathogen Porphyromonas gingivalis using genomic tiling microarray and RNA sequencing
High-density tiling microarray and RNA sequencing technologies were used to analyze the transcriptome of Porphyromonas gingivalis. The compiled P. gingivalis transcriptome were based on total RNA samples isolated from three different laboratory culturing conditions and the strand-specific transcript...
ORGANISM(S): Porphyromonas gingivalis W83 
2011-10-01 | E-GEOD-30452 | biostudies-arrayexpress
TranscriptomicsComprehensive transcriptome profiles distinguish the CSP and XIP signaling pathways in Streptococcus mutans UA159
In Streptococcus mutans, an oral colonizer associated with dental caries, competence for natural transformation can be triggered by both CSP and XIP pheromones. Competence induced by CSP is a late response that requires induction of the XIP encoding gene comS, but the mechanism(s) linking the two sy...
ORGANISM(S): Streptococcus mutans UA159 
2015-09-01 | E-GEOD-70067 | biostudies-arrayexpress
TranscriptomicsStrand-specific transcriptome profiling with directly labeled RNA on genomic tiling microarrays
Background: With lower manufacturing cost, high spot density, and flexible probe design, genomic tiling microarrays are ideal for comprehensive transcriptome studies. Typically, transcriptome profiling using microarrays involves reverse transcription, which converts RNA to cDNA. The cDNA is then lab...
ORGANISM(S): Porphyromonas gingivalis 
2010-12-09 | E-GEOD-25876 | biostudies-arrayexpress
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