Chen Z Z - OmicsDI

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Unknown (85786)
Proteomics (2608)
Transcriptomics (401)
Metabolomics (307)
Genomics (196)
Models (9)
Multiomics (7)
Other (3)

Organisms

Homo sapiens (659)
Mus musculus (213)
Arabidopsis thaliana (35)
Drosophila melanogaster (30)
Rattus norvegicus (22)
Caenorhabditis elegans (19)
Zea mays (14)
Saccharomyces cerevisiae (14)
Oryza sativa (12)
Gallus gallus (8)
Macaca mulatta (7)
Drosophila simulans (6)
Drosophila yakuba (5)
Sus scrofa (5)
Bombyx mori (5)
Gossypium hirsutum (4)
Drosophila pseudoobscura (4)
Oryza sativa Japonica Group (4)
Urocitellus parryii (3)
Apis mellifera (3)
Hordeum vulgare (3)
Danio rerio (3)
Vesicular stomatitis virus (2)
Oryctolagus cuniculus (2)
Pan troglodytes (2)
synthetic construct (2)
Oryza sativa Indica Group (2)
Schizosaccharomyces pombe (2)
Mycobacterium tuberculosis variant bovis BCG (1)
Iridovirus (1)

Organisms

Homo sapiens (4)
Mus musculus (3)
Drosophila melanogaster (2)
Yersinia pestis (1)
groundwater metagenome (1)
Streptomyces avermitilis (1)
Rattus norvegicus (1)

Repository

pride (1862)
iProX (559)
biostudies-arrayexpress (516)
MetaboLights (297)
PeptideAtlas (88)
EGA (62)
MassIVE (47)
PAXDB (40)
ENA (15)
BioModels (8)
geo (6)
jPOST (6)
GNPS (5)
NODE (5)
PanoramaPublic (4)
GPMDB (3)
Cell Collective (1)

Tissue

Cell culture (454)
Epithelial cell (122)
Brain (99)
Leaf (79)
Liver (77)
Others (63)
Plant cell (63)
Permanent cell line cell (56)
Lung (48)
Blood plasma (47)
Heart (45)
Kidney (40)
Whole body (38)
Blood (37)
Testis (34)
Hepatocyte (33)
Blood serum (31)
Spleen (27)
Root (26)
Cell suspension culture (23)
B cell (23)
Blood cell (23)
Plasma Non-glyco (22)
Bone marrow (22)
Mixture (5)
Solvent (4)
Leaf (2)
Root (2)
Male Reproductive System (2)
Brain (1)

Disease

Disease free (66)
Breast cancer (41)
Colon cancer (27)
Acute leukemia (27)
Cervix carcinoma (19)
Cardiovascular system disease (16)
Type 2 diabetes mellitus (16)
Prostate adenocarcinoma (12)
Non-small cell lung carcinoma (10)
Malignant neoplasm of ovary (10)
Lymphoma (8)
Hepatocellular carcinoma (7)
Brain glioblastoma multiforme (7)
Lung cancer (7)
Brain cancer (7)
Alzheimer's disease (6)
Wounds and Injuries (6)
Melanoma (5)
Lung adenocarcinoma (5)
Pancreatic ductal adenocarcinoma (5)
COVID-19 (5)
Plasmodium falciparum malaria (4)
Gastric adenocarcinoma (4)
Urinary bladder cancer (3)
Not Available (3)
Complement deficiency (1)
Astrocytoma (1)
Endometrioid carcinoma (1)
Infiltrating ductal carcinoma (1)
Normal (1)

Technology Type

Mass Spectrometry (1862)
Shotgun proteomics (876)
Bottom-up proteomics (341)
Mass spectrometry (235)
Data-dependent acquisition (204)
Affinity purification coupled with mass spectrometry proteomics (158)
Gel-based experiment (141)
Data-independent acquisition (117)
Top-down proteomics (73)
Chemical cross-linking coupled with mass spectrometry proteomics (73)
SWATH MS (60)
Mass spectrometry assay (59)
All-ion fragmentation (17)
Proteogenomics (16)
SRM/MRM (15)
Affinity proteomics (10)
Mass spectrometry imaging (9)
MSE (8)
DiaPASEF (8)
Illumina HiSeq 2000 (6)
NMR spectroscopy (4)
NextSeq 550, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 2000, unknown (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina Genome Analyzer II (1)

Instrument Platform

LTQ Orbitrap XL (62)
Q Exactive (24)
LTQ Orbitrap Velos (17)
Illumina HiSeq 2000 (12)
Orbitrap Fusion Lumos (6)
LTQ Orbitrap (6)
LTQ Orbitrap Elite (6)
Illumina HiSeq 2500 (5)
Q Exactive HF (5)
Illumina NovaSeq 6000 (3)
Instrument (3)
LTQ (3)
Illumina Genome Analyzer IIx (2)
NextSeq 500 (2)
TripleTOF 6600 (2)
Orbitrap Fusion ETD (2)
Orbitrap Eclipse (2)
Q Exactive HF-X (2)
Illumina HiSeq 2000 platform (1)
IScan (Illumina) (1)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
AB SOLiD 4 System (1)
Computerome (1)
418 [Affymetrix] (1)
Illumina Genome Analyzer II (1)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
Illumina HiSeq 4000 (1)
6520A Quadrupole Time-of-Flight LC/MS (1)

Publication Date

2025 (429)
2022 (369)
2026 (320)
2023 (316)
2024 (297)
2021 (273)
2020 (165)
2019 (158)
2013 (119)
2015 (114)
2014 (106)
2018 (105)
2016 (91)
2010 (86)
2011 (76)
2017 (72)
2012 (45)
2009 (13)
2008 (13)
2007 (7)
2005 (6)
2006 (4)
2004 (4)
2003 (1)
2027 (1)

UNIPROT ID/AC

PLA2R_HUMAN (29)
AATF_HUMAN (29)
GSTCD_HUMAN (29)
PECA1_HUMAN (29)
IFT20_HUMAN (29)
B3GT6_HUMAN (29)
DDX52_HUMAN (29)
H3BQ15_HUMAN (29)
A0A087WT00_HUMAN (29)
SMUG1_HUMAN (29)
UB2L3_HUMAN (29)
T2H2L_HUMAN (29)
TXNIP_HUMAN (29)
C9K0I3_HUMAN (29)
TASP1_HUMAN (29)
GOSR2_HUMAN (29)
TBC25_HUMAN (29)
VA0D2_HUMAN (29)
MBNL2_HUMAN (29)
DHR11_HUMAN (29)
CYFP1_HUMAN (29)
Q9LIE5 (1)
O24646 (1)
Q9FFA7 (1)
Q9LTJ6 (1)
Q9FN03 (1)
Q8LGH4 (1)
Q9M086 (1)
Q9SYX2 (1)
P43254 (1)

ENSEMBL ID

ENSG00000170477 (82)
ENSG00000147251 (10)
ENSG00000247315 (9)
ENSG00000229353 (3)
ENSG00000214897 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:30769 (83)
CHEBI:17368 (78)
CHEBI:16704 (76)
CHEBI:16335 (74)
CHEBI:17154 (72)
CHEBI:17596 (71)
CHEBI:16750 (68)
CHEBI:17568 (68)
CHEBI:16708 (67)
CHEBI:17895 (67)
CHEBI:15741 (65)
CHEBI:16919 (63)
CHEBI:17562 (61)
CHEBI:17295 (61)
CHEBI:7916 (60)
CHEBI:15891 (59)
CHEBI:15354 (59)
CHEBI:15756 (59)
CHEBI:16015 (56)
CHEBI:18012 (56)
CHEBI:16027 (56)
CHEBI:16737 (56)
CHEBI:16235 (55)
CHEBI:16828 (55)
CHEBI:6650 (54)
CHEBI:17821 (54)
CHEBI:18257 (53)
CHEBI:15428 (53)
CHEBI:17509 (53)
CHEBI:18050 (53)

Metabolite Name

Creatine (69)
Hypoxanthine (65)
Adenosine (61)
Uracil (60)
Uridine (60)
Adenine (59)
L-Tyrosine (56)
Inosine (56)
L-Phenylalanine (53)
Cytidine (51)
Thymine (50)
Creatinine (50)
Taurine (49)
Guanosine (49)
L-Histidine (48)
Guanine (48)
L-Arginine (47)
L-Glutamine (47)
Xanthine (47)
Betaine (46)
Choline (46)
Cytosine (44)
Citric acid (43)
Xanthosine (42)
L-Tryptophan (42)
Riboflavin (41)
L-Proline (39)
Succinic acid (39)
Pantothenic acid (39)
Palmitic acid (39)

First Public Date

2014 (8)
2023 (2)
2024 (1)
2022 (1)
2020 (1)
2018 (1)
2017 (1)

Modelling Approach

Ordinary differential equation model (8)

Lab affiliation

Huazhong Agricultural University (9)
Bioplatforms Australia (7)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (7)
Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (6)
Northwest University (6)
Zhejiang University (6)
Peking University (6)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (5)
Shandong Normal University (5)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (5)
Guangzhou Medical University (5)
University of Florida (5)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (5)
Yale University (5)
St. Jude Children's Research Hospital (5)
Michigan State University (5)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
Nanjing Medical University (4)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (4)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (4)
College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China (4)
Tsinghua University, China (4)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (4)
Xiamen University (4)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (4)
Shenyang Agricultural University (4)

IsPrivate

False (8)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (1)

Modification

15.994915 (4)
57.021464 (4)
2x(15)N labeled L-lysine (3)
4x(15)N labeled L-arginine (3)
Not available (3)
N6 (2)
1x(15)N labeled L-leucine (1)
71.037114 (1)
6-dioxaoctanediamine derivatized cysteine (1)
42.010565 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (202)
RNA-seq of coding RNA (116)
ChIP-seq (100)
RNA-seq of non coding RNA (22)
Methylation profiling by high throughput sequencing (15)
Unknown experiment type (14)
Comparative genomic hybridization by array (13)
Other (8)
Methylation profiling by array (8)
DNA-seq (4)
Transcription profiling by tiling array (2)
ChIP-chip by array (2)
Proteomic profiling by array (2)
ChIP-chip by SNP array (1)
Transcription profiling by high throughput sequencing (1)
ChIP-chip by tiling array (1)
RNAi profiling by array (1)
Genotyping by array (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (14517)
2022 (12104)
2023 (11245)
2024 (10976)
2021 (8912)
2020 (6382)
2019 (4310)
2018 (3663)
2017 (3037)
2016 (2479)
2026 (1984)
2015 (1954)
2014 (1484)
2013 (916)
2012 (671)
2011 (542)
2010 (382)
2009 (237)
2008 (181)
2007 (96)
2006 (85)
2005 (56)
2004 (28)
2003 (15)
2001 (15)
2002 (13)
2000 (7)
1998 (7)
1999 (3)
1997 (1)

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H3K27me3 ChIP-seq experiment in fruitfly testis somatic gonadal cells

In many metazoans, germ cells are separated from somatic lineages early in development and maintain their identity throughout life. Here we show that a Polycomb group (PcG) component, Enhancer of Zeste [E(z)] H3K27me3-specific methyltransferase, maintains germline identity in Drosophila adult testes...

ORGANISM(S): Drosophila melanogaster

2014-05-02 | E-GEOD-53238 | biostudies-arrayexpress

Molecular Mechanism of Z α1-Antitrypsin Deficiency.

Not available

S-EPMC4957051 | biostudies-literature

Bifunctional iron-catalyzed alkyne Z-selective hydroalkylation and tandem Z-E inversion via radical molding and flipping.

Not available

S-EPMC11452693 | biostudies-literature

Crystal Structure and Potential Head-to-Middle Condensation Function of a Z,Z-Farnesyl Diphosphate Synthase.

Not available

S-EPMC6044691 | biostudies-literature

Drosophila melanogaster