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GenomicsGlucocorticoid receptor profiling in IMR90, K562 and U2OS (ChIP-exo)
To identify the sequences responsible for recruitment of Glucocorticoid receptor (GR) to individual loci, we performed ChIP-seq and ChIP-exo that combines chromatin immunoprecipitation with an exonuclease digestion step. We performed these experiments in three cell lines : IMR90 (ATTC:CCL-186), U2O...
ORGANISM(S): Homo sapiens 
2015-02-25 | E-MTAB-2956 | biostudies-arrayexpress
GenomicsSimplified ChIP-exo assays
Simplified ChIP-exo assays
PRJNA434276 | ENA
GenomicsSimplified ChIP-exo assays II
Simplified ChIP-exo assays II
PRJNA471904 | ENA
GenomicsChIP-exo analysis of the DNA-binding sites of the yeast transcription factor Yfl052w sequenced by Illumina
We determined DNA-binding sites of the yeast transcription factor Yfl052w by ChIP-exo. Cells were grown in the YP media containing palatinose. Yfl052w was tagged with HA tag and anti-HA antibody was used for the immunoprecipitation. Examination of Yfl052 trancription factor in HA-tagged and wt cells...
ORGANISM(S): Saccharomyces cerevisiae 
2014-07-24 | E-GEOD-57900 | biostudies-arrayexpress
UnknownSimplified ChIP-exo assays.
Not available
S-EPMC6054642 | biostudies-literature
GenomicsCharacterizing protein-DNA binding event subtypes in ChIP-exo data
Characterizing protein-DNA binding event subtypes in ChIP-exo data
PRJNA433873 | ENA
GenomicsHigh-resolution Brachyury DNA-binding Sites Mapping by ChIP-exo
Mapping ultra high resolution of Brachyury:DNA interaction would provide us with valuable new mechanistic insights into complex molecular transactions at Brachyury-bound enhancers. Embryonic stem cells were differentiated into Brachyury-positive mesoendoderm cells. And, ChIP-exo experiment was then ...
ORGANISM(S): Mus musculus 
2014-03-10 | E-GEOD-54963 | biostudies-arrayexpress
GenomicsOptimized ChIP-exo for mammalian cells and patterned sequencing flow cells
Optimized ChIP-exo for mammalian cells and patterned sequencing flow cells
PRJNA1304777 | ENA
UnknownMACE: model based analysis of ChIP-exo.
Not available
S-EPMC4227761 | biostudies-literature
GenomicsHigh-resolution Sp1 DNA-binding Site Mapping by ChIP-exo in STHdh Q7/Q7 cells
Mapping ultra-high resolution of Sp1:DNA interaction would provide us with valuable new mechanistic insights into Sp1-mediated gene regulatory network in Huntington Disease cell culture model. STHdh Q7/Q7 cells were directly fixed and used for the ChIP-exo experiment.
ORGANISM(S): Mus musculus 
2016-07-15 | E-GEOD-84056 | biostudies-arrayexpress
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