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TranscriptomicsEvidence for Zoonotic Transmission of a Novel Adenovirus Associated with a Fulminant Pneumonia Outbreak in a Titi Monkey Colony
We used the Virochip microarray to detect and discover a novel adenovirus, TMAdV (titi monkey adenovirus). We used custom-commercial microarrays from Agilent Technologies. The microarray platform GPL11662 consists of 62,976 probes, of which 19,058 probes are 70-mer viral oligonucleotides (the unio...
ORGANISM(S): Callicebus cupreus 
2011-02-05 | E-GEOD-26898 | biostudies-arrayexpress
TranscriptomicsDiscovery of a Novel Human Polyomavirus in Acute Diarrheal Samples from Children
By unbiased deep sequencing, we identified a novel, highly divergent polyomavirus, provisionally named MX polyomavirus (MXPyV), in stool samples from children. From Mexico, 12 samples (out of 96) were positive for MxPyV by MXPyV-specific PCR. We used the ViroChip microarray and PCR to screen these 1...
ORGANISM(S): Homo sapiens 
2012-10-01 | E-GEOD-40008 | biostudies-arrayexpress
TranscriptomicsComprehensive Investigation of Archival and Prospectively Collected Samples Reveals No Association of the XMRV Gammaretrovirus with Prostate Cancer
XMRV, or xenotropic murine leukemia virus (MLV)-related virus, is a novel gammaretrovirus originally identified in studies that analyzed tissue from prostate cancer patients in 2006 and blood from patients with chronic fatigue syndrome (CFS) in 2009. However, a large number of subsequent studies fai...
ORGANISM(S): Homo sapiens 
2012-09-01 | E-GEOD-39684 | biostudies-arrayexpress
TranscriptomicsHuman respiratory and stool specimens used to detect cardioviruses
Cardioviruses are a genus of picornaviruses that cause severe illnesses in rodents, but little is known about the prevalence, diversity, or spectrum of disease of such agents among humans. We report the identification of a group of human cardioviruses that have been detected and cloned directly fro...
ORGANISM(S): Viruses 
2008-09-17 | E-GEOD-11569 | biostudies-arrayexpress
TranscriptomicsA Metagenomics Analysis of Pandemic 2009 H1N1 Infection in Patients in North America
The Virochip microarray (version 4.0) was used to detect viruses in patients from North America with unexplained influenza-like illness at the onset of the 2009 H1N1 pandemic. We used metagenomics-based technologies (the Virochip microarray) and deep sequencing to analyze nasal swab samples from ind...
ORGANISM(S): Homo sapiens 
2010-11-01 | E-GEOD-24034 | biostudies-arrayexpress
TranscriptomicsRERG is a novel ras-related, estrogen-regulated and growth-inhibitory gene in breast cancer
Using microarray analysis, we identified a unique ras superfamily gene, termed RERG (ras-related and estrogen-regulated growth inhibitor), whose expression was decreased or lost in a significant percentage of primary human breast tumors that show a poor clinical prognosis. Importantly, high RERG exp...
ORGANISM(S): Homo sapiens 
2005-07-23 | E-GEOD-2987 | biostudies-arrayexpress
TranscriptomicsIdentification of a Molecular Signature for Acute Lyme Disease by Human Transcriptome Profiling
Lyme disease is challenging to diagnose, as clinical manifestations are variable and current tools to detect nucleic acid or antibody responses from Borrelia burgdorferi infection have low sensitivity. Here we conducted the first study of the global transcriptome of patients with Lyme disease to id...
ORGANISM(S): Homo sapiens 
2016-02-15 | E-GEOD-63085 | biostudies-arrayexpress
UnknownTBCRC 001: randomized phase II study of cetuximab in combination with carboplatin in stage IV triple-negative breast cancer.
Not available
S-EPMC3413275 | biostudies-literature
TranscriptomicsPediatric RTIs
This series includes 278 microarrays used to detect respiratory viruses in a set of nasopharyngeal lavage specimens from children with respiratory tract infections Objective: To assess the utility of a pan-viral DNA microarray platform (Virochip) in the detection of viruses associated with pediatri...
ORGANISM(S): Viruses 
2010-05-26 | E-GEOD-10294 | biostudies-arrayexpress
UnknownPatient Perceived Barriers and Enablers to Medication Adherence in the Treatment of Depression: A Qualitative Study.
Not available
S-EPMC11492215 | biostudies-literature
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