Chlamydomonas reinhardtii

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Genomics (1814)
Unknown (1530)
Proteomics (171)
Transcriptomics (168)
Metabolomics (18)
Methylation profiling (11)
Other (7)
Models (2)

Organisms

Chlamydomonas reinhardtii (195)
Arabidopsis thaliana (12)
Volvox carteri (8)
Homo sapiens (5)
Drosophila melanogaster (4)
Mus musculus (4)
Dunaliella tertiolecta (3)
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Nicotiana tabacum (2)
Phaeodactylum tricornutum (2)
Physcomitrium patens (2)
Populus trichocarpa (2)
Zea mays (2)
Chlamydomonas moewusii (1)
Scenedesmus vacuolatus (1)
Saccharomyces cerevisiae (1)
Amborella trichopoda (1)
Aristolochia fimbriata (1)
Auricularia delicata (1)
Citrus sinensis (1)
Haptophyta environmental samples (1)
Marsilea quadrifolia (1)
Miscanthus x giganteus (1)
Nannochloropsis oceanica (1)
Spizellomyces punctatus (1)

Organisms

Chlamydomonas reinhardtii (1627)
algae metagenome (15)
fungus metagenome (9)
Volvox carteri (3)
Arabidopsis thaliana (3)
Parachlorella kessleri (2)
Saccharomyces cerevisiae (2)
Parachlorella sp. MACC-38 (1)
Polytomella (1)
Chlamydomonas eustigma (1)
Dunaliella tertiolecta (1)
Cyanidioschyzon merolae (1)
Chlamydomonas urium (1)
Botryosphaerella sudetica (1)
Chlamydomonas (1)
Rhodococcus qingshengii (1)
Drosophila melanogaster (1)
Phaeodactylum tricornutum (1)
Nicotiana tabacum (1)
Mus musculus (1)

Repository

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BioModels (2)
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NODE (1)

Tissue

Photosynthetic cell (37)
Cell culture (21)
Cell suspension culture (10)
Plant cell (9)
Algae (4)
Whole body (4)
Culture supernatant (2)
Flagellate (2)
Leaf (2)
Photosynthetic organism (1)
Cilium (1)
Culture condition: dark grown cells (1)
Epithelial cell (1)
Permanent cell line cell (1)
Seedling (1)

Disease

Disease free (3)
Not Available (1)
Chronic bronchitis (1)
Developmental and epileptic encephalopathy 2 (1)
Neurodevelopmental abnormality (1)

Technology Type

Mass Spectrometry (142)
Shotgun proteomics (66)
Bottom-up proteomics (30)
Data-dependent acquisition (22)
Gel-based experiment (19)
Affinity purification coupled with mass spectrometry proteomics (8)
Mass spectrometry (6)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Proteogenomics (5)
SWATH MS (4)
Top-down proteomics (4)
ESI (3)
Data-independent acquisition (3)
EI (2)
HDMSE (2)
Mass spectrometry assay (1)
Affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2000 (4)
Agilent 5975 GC-MS (3)
Orbitrap Exploris 240 (3)
LTQ Orbitrap Elite (2)
Q Exactive (2)
X500R QTOF (2)
Orbitrap Eclipse (2)
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LTQ-Orbitrap (2)
AB SOLiD 4 System (1)
Instrument (1)
Orbitrap Fusion (1)
Pagasus 4D GC-MS (LECO) (1)
Pegasus 4D (1)
Liquid Chromatography MS - - reverse phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Gas Chromatography MS - (1)
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Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Orbitrap (1)

Publication Date

2025 (52)
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2011 (28)
2019 (22)
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2023 (21)
2014 (20)
2013 (20)
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2012 (15)
2010 (15)
2020 (14)
2015 (14)
2017 (13)
2005 (5)
2007 (3)
2006 (3)
2009 (2)
2008 (2)
2004 (2)

UNIPROT ID/AC

A8J2S3 (1)
A8J6K7 (1)

CHEBI ID

CHEBI:18012 (5)
CHEBI:6650 (5)
CHEBI:30915 (5)
CHEBI:15971 (4)
CHEBI:17148 (4)
CHEBI:17295 (4)
CHEBI:17053 (4)
CHEBI:17895 (4)
CHEBI:16015 (4)
CHEBI:15741 (4)
CHEBI:17553 (4)
CHEBI:16414 (4)
CHEBI:17992 (4)
CHEBI:16857 (4)
CHEBI:46905 (3)
CHEBI:22470 (3)
CHEBI:30653 (3)
CHEBI:16199 (3)
CHEBI:25048 (3)
CHEBI:16977 (3)
CHEBI:17115 (3)
CHEBI:17754 (3)
CHEBI:26078 (3)
CHEBI:17138 (3)
CHEBI:16995 (3)
CHEBI:340824 (3)
CHEBI:32816 (3)
CHEBI:15846 (3)
CHEBI:16449 (3)
CHEBI:18050 (3)

Metabolite Name

Sucrose (3)
Xylitol (2)
Oxalic acid (2)
Urea (2)
L-serine (2)
Glycerol (2)
Maltose (2)
Putrescine (2)
L-histidine (2)
Lactic acid (2)
GSSG (2)
Glycine (2)
Glucose (2)
L-glutamine (2)
Fumaric acid (2)
L-alanine (2)
L-tyrosine (2)
L-valine (2)
Succinic acid (2)
L-phenylalanine (2)
L-threonine (2)
Phosphoric acid (2)
L-Pyroglutamic acid (2)
NADP (2)
NAD (2)
ATP (2)
AMP (2)
Alanine (2)
ADP (2)
L-citrulline (2)

First Public Date

2016 (526)
2020 (334)
2023 (243)
2025 (188)
2019 (151)
2017 (140)
2014 (41)
2013 (33)
2024 (32)
2026 (28)
2021 (25)
2022 (20)
2015 (17)
2018 (13)
2012 (2)
2010 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (7)
EDyP (3)
Institute of Plant Biology and Biotechnology, University of Muenster (3)
Professor (3)
Associate professer (2)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (2)
Faculty of Biology Technion Haifa 32000 Israel (2)
IBBP, WWU Muenster (2)
Institut de Biologie Physico-Chimique, UMR8226, CNRS, Sorbonne Universités, UPMC Univ Paris 06, 13 rue Pierre et Marie Curie, 75005 Paris (2)
Light, Photosynthesis & Metabolism (LPM) & Exploring the Dynamics of Proteomes (EDyP) IRIG, CEA-Grenoble 17 rue des Martyrs, 38000 Grenoble, France (2)
Molecular Biotechnology & Systems Biology, TU Kaiserslautern, Kaiserslautern, Germany (2)
Molecular Genetics, TU Kaiserslautern (2)
Program in Molecular Medicine, UMass Chan Medical School (2)
University of California Los Angeles (2)
WWU Muenster, Institute of Plant Biology and Biotechnology (2)
WWU Münster (2)
Aix Marseille Univ, CNRS, BIP, UMR7281, IMM, FR3479 (1)
Aix-Marseille Université, CEA, CNRS, Institute of Biosciences and Biotechnologies of Aix-Marseille, UMR 7265, CEA Cadarache, Saint-Paul-lez Durance F-13108, France (1)
Assistant Professor, Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (1)
Bioinformatics, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany (1)
Biology and Biochemistry (1)
Boyce Thompson Institute (1)
C. R., Genetics and Physiology of Microalgae, InBios/Phytosystems research unit, University of Liège, 4000 Liège, Belgium Telephone +3243663812 (1)
CEA, CNRS, Aix-Marseille University, Institute of Biosciences and Biotechnologies of Aix-Marseille (BIAM), UMR7265, CEA Cadarache, 13108 Saint-Paul-lez-Durance, France (1)
Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona 08003, Catalonia, Spain (1)
Chemical and Biological engineering, The University of Sheffield (1)
Climate Change Cluster, University of Technology Sydney, 15 Broadway, Ultimo 2007, Sydney, NSW, Australia (1)
Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine University of Copenhagen (1)
Departamento de Genética Molecular, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Apartado Postal 70-243, México 04510, D.F. (Mexico) (1)
Departamento de Genética Molecular, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City, Mexico. (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Modification

Not available (2)
15.994915 (1)
57.021464 (1)

Study type

RNA-seq of coding RNA (31)
Transcription profiling by array (22)
Unknown experiment type (5)
RNA-seq of non coding RNA (4)
Other (2)
MicroRNA profiling by high-throughput sequencing (1)
Plant - High-throughput sequencing (1)
ChIP-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2023 (121)
2022 (118)
2021 (114)
2020 (111)
2018 (97)
2017 (96)
2024 (95)
2025 (93)
2019 (84)
2015 (83)
2016 (77)
2014 (73)
2013 (68)
2012 (56)
2011 (52)
2010 (48)
2009 (40)
2008 (33)
2006 (29)
2005 (24)
2007 (18)
2003 (16)
2004 (14)
2002 (11)
2026 (8)
2001 (7)
2000 (6)
1999 (2)
1998 (2)
1997 (2)

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The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis

Drastic alteration in macronutrients causes large changes in gene expression in the photosynthetic unicellular alga Chlamydomonas reinhardtii. Preliminary data suggested that cells follow a biphasic response to this change hinging on the initiation of lipid accumulation, and we hypothesized that ...

2015-06-29 | MTBLS208 | MetaboLights

Inositol polyphosphates regulate resilient mechanisms in the green alga Chlamydomonas reinhardtii to adapt to extreme nutrient conditions

In the actual context of climate changing environments, photosynthetic organisms need to adapt to more extreme conditions. Microalgae can be excellent organisms to understand molecular mechanisms that activate survival mechanisms under stress. Chlamydomonas reinhardtii signaling mutants are extre...

2024-12-05 | MTBLS10779 | MetaboLights

Inositol Pyrophosphates Mediate Chloroplast Lipid Remodeling and Nuclear Gene Repression during High-Light Acclimation in Chlamydomonas reinhardtii

Microalgae are photosynthetic organisms capable of autotrophic growth. Their applicability in multiple industrial fields has been largely studied, thanks to their ability to fixate CO2 into high added value organic products like fatty acids and carotenoids. However, our under-standing of the cellula...

2026-06-09 | MTBLS14720 | MetaboLights

Small RNAs in Chlamydomonas reinhardtii

RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing Small RNAs were prepared from Chlamydomonas reinhardtii total extracts,ligated to a 3' adaptor and a 5' acceptor sequentially, and then RT-PCR amplified. PCR products were reamplified using a pair of 454 cloning pr...