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ProteomicsRole of CHR4 during floral transition
Several pathways conferring environmental flowering responses in Arabidopsis converge on developmental processes that mediate floral transition in the shoot apical meristem. Many characterized mutations disrupt these environmental responses, but downstream developmental processes have been more refr...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-03-02 | PXD016457 | Pride
Arabidopsis Chromatin remodeling 4 (chr4) Apetala1 (ap1) Squamosa promoter binding protein-like family Flowering-time Mads-box transcription factors 
GenomicsH3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [ChIP-seq]
H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [ChIP-seq]
PRJNA590704 | ENA
GenomicsH3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [RNA-seq]
H3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [RNA-seq]
PRJNA590705 | ENA
GenomicsH3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [ChIP-seq]
Several pathways conferring environmental flowering responses in Arabidopsis converge on developmental processes that act in the shoot apical meristem to mediate the floral transition. Many characterized mutations impair environmental flowering responses, however downstream developmental processes h...
ORGANISM(S): Arabidopsis thaliana 
2020-02-14 | GSE140727 | GEO
TranscriptomicsH3K27me3 and H3K4me3 profiles in chr4/pkr1 and WT [RNA-seq]
Several pathways conferring environmental flowering responses in Arabidopsis converge on developmental processes that act in the shoot apical meristem to mediate the floral transition. Many characterized mutations impair environmental flowering responses, however downstream developmental processes h...
ORGANISM(S): Arabidopsis thaliana 
2020-02-14 | GSE140726 | GEO
GenomicsChIP-seq O-GlcNac in mouse ES cells
Analysis of O-GlcNac occupancy on chromatin in mouse ES cells by ChIP-seq
ORGANISM(S): Mus musculus 
2024-08-31 | E-MTAB-14310 | biostudies-arrayexpress
TranscriptomicsCutnRun of O-GlcNac in mouse ES cells in high glucose condition
Study of the chromatin occupancy of O-GlcNac in mouse ES cells cultivated in a high glucose concentration media
ORGANISM(S): Mus musculus 
2024-08-31 | E-MTAB-14308 | biostudies-arrayexpress
TranscriptomicsCutnRun of O-GlcNac in mouse ES cells in low glucose condition at 6 hours, 8 hours, and 1 week
Study of the chromatin occupancy of O-GlcNac in mouse ES cells cultivated in low glucose condition at 6 hours, 8 hours, and 1 week
ORGANISM(S): Mus musculus 
2024-08-31 | E-MTAB-14309 | biostudies-arrayexpress
TranscriptomicsTransient Pairing of Homologous Oct4 Alleles Accompanies the Onset of Embryonic Stem Cell Differentiation
The relationship between chromatin organization and transcriptional regulation is an area of intense investigation. We have characterized the spatial relationships between alleles of the Oct4, Sox2, and Nanog genes in single cells during the earliest stages of mouse embryonic stem cell (ESC) differe...
ORGANISM(S): Mus musculus 
2015-02-03 | E-GEOD-65510 | biostudies-arrayexpress
TranscriptomicsATAC-seq in the differentiation system ESC to NPC upon O-GlcNAc removal
This experiment uses a transgenic cell line expressing bacterial OGA BtGH84 fused to a localization peptide (NLS) and regulated by Tet-On system. OGA is a glycosidase that removes O-GlcNAc modifications. We evaluated the changes in chromatin openness before and after O-GlcNac removal by OGA.
ORGANISM(S): Mus musculus 
2024-08-31 | E-MTAB-14350 | biostudies-arrayexpress
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